ACTA2

protein-coding

actin alpha 2, smooth muscle, the group of Actins

Gene summary

This gene encodes one of six different actin proteins. Actins are highly conserved proteins that are involved in cell motility, structure, integrity, and intercellular signaling. The encoded protein is a smooth muscle actin that is involved in vascular contractility and blood pressure homeostasis. Mutations in this gene cause a variety of vascular diseases, such as thoracic aortic disease, coronary artery disease, stroke, and Moyamoya disease, as well as multisystemic smooth muscle dysfunction syndrome. [provided by RefSeq, Sep 2017]

MANE transcript

NM_001613.4

Inheritance

AD

ClinVar variants

P:71U:332B:178

Top phenotype

Moyamoya disease 5; Smooth muscle dysfunction syndrome; Aortic aneurysm, familial thoracic 6

gnomAD constraint

pLI —, LoF o/e 0.12

Max pathogenic AF

—

Genomic locus

chr10:88,934,822-88,991,339

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~56.5 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

multisystemic smooth muscle dysfunction syndromeSTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0013452

Submitter: Labcorp Genetics (formerly Invitae)

connective tissue disorderMODERATE

Inheritance Pattern: AD

Disease ID:MONDO:0003900

Submitter: Genomics England PanelApp

familial thoracic aortic aneurysm and aortic dissectionSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0019625

Submitter: Orphanet

multisystemic smooth muscle dysfunction syndromeSUPPORTIVE

Inheritance Pattern: Unknown

Disease ID:MONDO:0013452

Submitter: Orphanet

Moyamoya disease 5STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0013542

Submitter: G2P

multisystemic smooth muscle dysfunction syndromeDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0013452

Submitter: ClinGen

*ACTA2* was first reported in relation to autosomal dominant familial thoracic aortic aneurysm and dissection (FTAAD) in 2007 (Guo et al., PMID: 17994018). Since 2007, it has also been reported in relation to smooth muscle dysfunction syndrome and Moyamoya disease (PMIDs: 19409525, 20734336). Individuals with variants in *ACTA2* can have variable features including, but not limited to, dysfunction of smooth muscle throughout the body manifesting with familial thoracic aortic aneurysms and dissections, coronary artery disease, early-onset atherosclerosis, patent ductus arteriosus, intestinal hypoperistalsis, hypotonic bladder, congenital mydriasis, livedo reticularis, pulmonary hypertension, and cerebrovascular disease resulting in transient ischemic attacks or strokes (PMIDs: 17994018, 29300374, 19409525, 20734336). Variants in *ACTA2*, notably R179H/C, have been associated with a characteristic brain malformation which includes anterior callosal hypoplasia, notching of the brainstem, and radial dysgyria in addition to characteristic twig-like branching of the cerebral arteries and anterior circulation steno-occlusive disease downstream of dilated cavernous carotid arteries (reviewed in PMID: 30300893; primary evidence in PMID: 34857515, 33199432, 30262641). Per criteria outlined by the ClinGen Lumping and Splitting Working Group, we found no difference in molecular mechanism, inheritance pattern, or phenotypic variability. Therefore, the following disease entities have been lumped into one disease entity: Smooth Muscle Dysfunction Syndrome (OMIM: 613834), Familial Thoracic Aortic Aneurysm and Dissection (OMIM: 611788) and Moyamoya disease (OMIM: 614042). Ten unique missense variants that have been reported in 17 probands across 4 publications (PMIDs: 17994018, 29300374, 19409525, 20734336) are included in this curation. Much of the literature links *ACTA2*-related SMDS solely to the R179 residue; however, new evidence has been reported on variants in other residues that also cause SMDS features. This residue has been associated with the most severe phenotypes and often a pediatric age of onset (PMID: 35567597). More evidence is available in the literature, but the maximum score for genetic evidence has been reached. The mechanism of pathogenicity is reported to be dominant negative. This gene-disease association is also supported by experimental evidence including biochemical function assays showing that contractile function disruption and smooth muscle cell (SMC) proliferation are consistent with the vascular phenotypes found in patients with *ACTA2*-related FTAAD (PMID: 17994018). The function of *ACTA2* is consistent with that of *MYH11* which has been known to cause TAAD and was given a definitive classification by the HTAAD GCEP (PMID: 17994018). Expression data shows that *ACTA2* is highly expressed in relevant tissue: smooth muscle and the aorta (PMIDs: 23715323, 28940711). Guo et. al., 2009 (PMID: 19409525) also found that SMCs and myofibroblasts explanted from patients with heterozygous *ACTA2* variants result in increased proliferation of smooth muscle cells, which was shown to result in reduction in the lumen diameter leading to occlusion of the arteries. Finally, *ACTA2* knockout mouse models show decreased expression of *ACTA2*, increased aorta dilation, and reduced contractility of smooth muscle cells compared to WT groups (PMIDs: 15371786, 30233845). In summary, *ACTA2* is definitively associated with autosomal dominant multisystemic smooth muscle dysfunction syndrome. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. The classification of *ACTA2* for FTAAD was originally approved by the ClinGen Heritable Thoracic Aortic Aneurysm and Dissection Gene Curation Expert Panel on September 9, 2016. It was reevaluated on 1/24/2025 and expanded to include smooth muscle dysfunction syndrome and Moyamoya-like disease. As a result of this reevaluation, the classification did not change. This classification was approved by the ClinGen Heritable Thoracic Aortic Aneurysm and Dissection subgroup of the Hereditary Cardiovascular Disease GCEP on 1/24/2025 (SOP Version 11).

Moyamoya disease 5STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0013542

Submitter: Genomics England PanelApp

multisystemic smooth muscle dysfunction syndromeDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0013452

Submitter: G2P

aortic aneurysm, familial thoracic 6STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0012730

Submitter: Labcorp Genetics (formerly Invitae)

Clinical Genomic Database (CGD)

Moyamoya disease 5; Smooth muscle dysfunction syndrome; Aortic aneurysm, familial thoracic 6AD

Manifestation: Cardiovascular; Dermatologic; Musculoskeletal; Neurologic; Ophthalmologic

Intervention: Cardiovascular

Rationale: Surveillance for cardiovascular complications (eg, aortic aneurysm), as well as related preventive measures to help control contributory factors may reduce morbidity and mortality by allowing early diagnosis and treatment; There has been a reported increased risk of aortic dissection with minimal aortic dilatation during the pregnancies of affected women, and awareness may allow monitoring and management

Refs: 17994018; 19409525; 22051261; 22302747; 24243736; 29300374Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to ACTA2 variants in ClinVar

23 Conditions Cataloged
Aortic aneurysm, familial thoracic 6Total: 450
Familial thoracic aortic aneurysm and aortic dissectionTotal: 363
not providedTotal: 181
not specifiedTotal: 60
ACTA2-related disorderTotal: 46
Multisystemic smooth muscle dysfunction syndromeTotal: 33
Moyamoya disease 5Total: 22
Cardiovascular phenotypeTotal: 12

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_001613.4. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
5
clinvar
177
clinvar
182
missense
12
clinvar
48
clinvar
278
clinvar
1
clinvar
339
nonsense
1
clinvar
13
clinvar
14
start loss
2
clinvar
2
frameshift
1
clinvar
3
clinvar
24
clinvar
28
splice donor/acceptor (+/-2bp)
2
clinvar
4
clinvar
10
clinvar
16
Total15563321780581

Highest pathogenic variant AF is 0.0000065754866

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 81 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_001613.4RefSeqNP_001604.18MANE Select
ENST00000224784.10EnsemblENSP00000224784.68MANE Select
NM_001141945.3RefSeqNP_001135417.18Standard
NM_001320855.2RefSeqNP_001307784.18Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
acta2Danio rerio

Structure: intestine

Quality: non-contractile

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Relaxin signaling pathway - Homo sapiens (human)
  • Apelin signaling pathway - Homo sapiens (human)
  • Vascular smooth muscle contraction - Homo sapiens (human)
  • Myometrial Relaxation and Contraction Pathways
  • Striated Muscle Contraction

Biological Process

  • muscle contraction
  • regulation of blood pressure
  • response to virus
  • positive regulation of gene expression
  • vascular smooth muscle contraction

Molecular Function

  • ATP binding
  • protein kinase binding

Cellular Component

  • extracellular space
  • cytoplasm
  • cytosol
  • actin cytoskeleton
  • lamellipodium

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000458208
Coding exons
8
Length
56317
Individuals with no LoFs
125671
Homozygous LoFs
0
Heterozygous LoFs
6
Defined
125677
p
0.0000239
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense3.20912270.4020.00001412490
Missense (PolyPhen)1882.0970.21925898
Synonymous1.087284.70.8500.00000541737
Loss of Function3.41217.30.1169.34e-7201

Population LoF Frequency

PopulationCAFp-valueStatus
African00.0absent
Latino/Admixed American0.0000290.000029rare
Ashkenazi Jewish00.0absent
East Asian00.0absent
Finnish0.0000460.000046rare
European (Non-Finnish)0.0000350.000035rare
South Asian00.0absent
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.;
Disease
DISEASE: Note=ACTA2 mutations predispose patients to a variety of diffuse and diverse vascular diseases, premature onset coronary artery disease (CAD), premature ischemic strokes and Moyamoya disease. {ECO:0000269|PubMed:19409525}.; DISEASE: Aortic aneurysm, familial thoracic 6 (AAT6) [MIM:611788]: A disease characterized by permanent dilation of the thoracic aorta usually due to degenerative changes in the aortic wall. It is primarily associated with a characteristic histologic appearance known as 'medial necrosis' or 'Erdheim cystic medial necrosis' in which there is degeneration and fragmentation of elastic fibers, loss of smooth muscle cells, and an accumulation of basophilic ground substance. {ECO:0000269|PubMed:17994018, ECO:0000269|PubMed:19409525, ECO:0000269|PubMed:19639654}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Moyamoya disease 5 (MYMY5) [MIM:614042]: A progressive cerebral angiopathy characterized by bilateral intracranial carotid artery stenosis and telangiectatic vessels in the region of the basal ganglia. The abnormal vessels resemble a 'puff of smoke' (moyamoya) on cerebral angiogram. Affected individuals can develop transient ischemic attacks and/or cerebral infarction, and rupture of the collateral vessels can cause intracranial hemorrhage. Hemiplegia of sudden onset and epileptic seizures constitute the prevailing presentation in childhood, while subarachnoid bleeding occurs more frequently in adults. {ECO:0000269|PubMed:20970362}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Multisystemic smooth muscle dysfunction syndrome (MSMDYS) [MIM:613834]: A syndrome characterized by dysfunction of smooth muscle cells throughout the body, leading to aortic and cerebrovascular disease, fixed dilated pupils, hypotonic bladder, malrotation, and hypoperistalsis of the gut and pulmonary hypertension. {ECO:0000269|PubMed:20734336}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.156

Intolerance Scores

LoFtool
0.129
RVIS EVS
-0.27
RVIS percentile EVS
33.97

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.834

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumLowLow
Primary ImmunodeficiencyMediumLowMedium
CancerMediumLowMedium
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.