ACTA2
protein-codingactin alpha 2, smooth muscle, the group of Actins
Gene summary
This gene encodes one of six different actin proteins. Actins are highly conserved proteins that are involved in cell motility, structure, integrity, and intercellular signaling. The encoded protein is a smooth muscle actin that is involved in vascular contractility and blood pressure homeostasis. Mutations in this gene cause a variety of vascular diseases, such as thoracic aortic disease, coronary artery disease, stroke, and Moyamoya disease, as well as multisystemic smooth muscle dysfunction syndrome. [provided by RefSeq, Sep 2017]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~56.5 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AD
Disease ID:MONDO:0013452
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0003900
Submitter: Genomics England PanelApp
Inheritance Pattern: AD
Disease ID:MONDO:0019625
Submitter: Orphanet
Inheritance Pattern: Unknown
Disease ID:MONDO:0013452
Submitter: Orphanet
Inheritance Pattern: AD
Disease ID:MONDO:0013542
Submitter: G2P
Inheritance Pattern: AD
Disease ID:MONDO:0013452
Submitter: ClinGen
*ACTA2* was first reported in relation to autosomal dominant familial thoracic aortic aneurysm and dissection (FTAAD) in 2007 (Guo et al., PMID: 17994018). Since 2007, it has also been reported in relation to smooth muscle dysfunction syndrome and Moyamoya disease (PMIDs: 19409525, 20734336). Individuals with variants in *ACTA2* can have variable features including, but not limited to, dysfunction of smooth muscle throughout the body manifesting with familial thoracic aortic aneurysms and dissections, coronary artery disease, early-onset atherosclerosis, patent ductus arteriosus, intestinal hypoperistalsis, hypotonic bladder, congenital mydriasis, livedo reticularis, pulmonary hypertension, and cerebrovascular disease resulting in transient ischemic attacks or strokes (PMIDs: 17994018, 29300374, 19409525, 20734336). Variants in *ACTA2*, notably R179H/C, have been associated with a characteristic brain malformation which includes anterior callosal hypoplasia, notching of the brainstem, and radial dysgyria in addition to characteristic twig-like branching of the cerebral arteries and anterior circulation steno-occlusive disease downstream of dilated cavernous carotid arteries (reviewed in PMID: 30300893; primary evidence in PMID: 34857515, 33199432, 30262641). Per criteria outlined by the ClinGen Lumping and Splitting Working Group, we found no difference in molecular mechanism, inheritance pattern, or phenotypic variability. Therefore, the following disease entities have been lumped into one disease entity: Smooth Muscle Dysfunction Syndrome (OMIM: 613834), Familial Thoracic Aortic Aneurysm and Dissection (OMIM: 611788) and Moyamoya disease (OMIM: 614042). Ten unique missense variants that have been reported in 17 probands across 4 publications (PMIDs: 17994018, 29300374, 19409525, 20734336) are included in this curation. Much of the literature links *ACTA2*-related SMDS solely to the R179 residue; however, new evidence has been reported on variants in other residues that also cause SMDS features. This residue has been associated with the most severe phenotypes and often a pediatric age of onset (PMID: 35567597). More evidence is available in the literature, but the maximum score for genetic evidence has been reached. The mechanism of pathogenicity is reported to be dominant negative. This gene-disease association is also supported by experimental evidence including biochemical function assays showing that contractile function disruption and smooth muscle cell (SMC) proliferation are consistent with the vascular phenotypes found in patients with *ACTA2*-related FTAAD (PMID: 17994018). The function of *ACTA2* is consistent with that of *MYH11* which has been known to cause TAAD and was given a definitive classification by the HTAAD GCEP (PMID: 17994018). Expression data shows that *ACTA2* is highly expressed in relevant tissue: smooth muscle and the aorta (PMIDs: 23715323, 28940711). Guo et. al., 2009 (PMID: 19409525) also found that SMCs and myofibroblasts explanted from patients with heterozygous *ACTA2* variants result in increased proliferation of smooth muscle cells, which was shown to result in reduction in the lumen diameter leading to occlusion of the arteries. Finally, *ACTA2* knockout mouse models show decreased expression of *ACTA2*, increased aorta dilation, and reduced contractility of smooth muscle cells compared to WT groups (PMIDs: 15371786, 30233845). In summary, *ACTA2* is definitively associated with autosomal dominant multisystemic smooth muscle dysfunction syndrome. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. The classification of *ACTA2* for FTAAD was originally approved by the ClinGen Heritable Thoracic Aortic Aneurysm and Dissection Gene Curation Expert Panel on September 9, 2016. It was reevaluated on 1/24/2025 and expanded to include smooth muscle dysfunction syndrome and Moyamoya-like disease. As a result of this reevaluation, the classification did not change. This classification was approved by the ClinGen Heritable Thoracic Aortic Aneurysm and Dissection subgroup of the Hereditary Cardiovascular Disease GCEP on 1/24/2025 (SOP Version 11).
Inheritance Pattern: AD
Disease ID:MONDO:0013542
Submitter: Genomics England PanelApp
Inheritance Pattern: AD
Disease ID:MONDO:0013452
Submitter: G2P
Inheritance Pattern: AD
Disease ID:MONDO:0012730
Submitter: Labcorp Genetics (formerly Invitae)
Clinical Genomic Database (CGD)
Manifestation: Cardiovascular; Dermatologic; Musculoskeletal; Neurologic; Ophthalmologic
Intervention: Cardiovascular
Rationale: Surveillance for cardiovascular complications (eg, aortic aneurysm), as well as related preventive measures to help control contributory factors may reduce morbidity and mortality by allowing early diagnosis and treatment; There has been a reported increased risk of aortic dissection with minimal aortic dilatation during the pregnancies of affected women, and awareness may allow monitoring and management
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to ACTA2 variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_001613.4. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 5 | 177 | 182 | |||
| missense | 12 | 48 | 278 | 1 | 339 | |
| nonsense | 1 | 13 | 14 | |||
| start loss | 2 | 2 | ||||
| frameshift | 1 | 3 | 24 | 28 | ||
| splice donor/acceptor (+/-2bp) | 2 | 4 | 10 | 16 | ||
| Total | 15 | 56 | 332 | 178 | 0 | 581 |
Highest pathogenic variant AF is 0.0000065754866
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_001604.1 | 8 | MANE Select | |
| Ensembl | ENSP00000224784.6 | 8 | MANE Select | |
| RefSeq | NP_001135417.1 | 8 | Standard | |
| RefSeq | NP_001307784.1 | 8 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| acta2 | Danio rerio | Structure: intestine Quality: non-contractile abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Relaxin signaling pathway - Homo sapiens (human)
- Apelin signaling pathway - Homo sapiens (human)
- Vascular smooth muscle contraction - Homo sapiens (human)
- Myometrial Relaxation and Contraction Pathways
- Striated Muscle Contraction
Biological Process
- muscle contraction
- regulation of blood pressure
- response to virus
- positive regulation of gene expression
- vascular smooth muscle contraction
Molecular Function
- ATP binding
- protein kinase binding
Cellular Component
- extracellular space
- cytoplasm
- cytosol
- actin cytoskeleton
- lamellipodium
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000458208
- Coding exons
- 8
- Length
- 56317
- Individuals with no LoFs
- 125671
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 6
- Defined
- 125677
- p
- 0.0000239
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 3.20 | 91 | 227 | 0.402 | 0.0000141 | 2490 |
| Missense (PolyPhen) | 18 | 82.097 | 0.21925 | 898 | ||
| Synonymous | 1.08 | 72 | 84.7 | 0.850 | 0.00000541 | 737 |
| Loss of Function | 3.41 | 2 | 17.3 | 0.116 | 9.34e-7 | 201 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0 | 0.0 | absent |
| Latino/Admixed American | 0.000029 | 0.000029 | rare |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0 | 0.0 | absent |
| Finnish | 0.000046 | 0.000046 | rare |
| European (Non-Finnish) | 0.000035 | 0.000035 | rare |
| South Asian | 0 | 0.0 | absent |
| Other | 0 | 0.0 | absent |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.;
- Disease
- DISEASE: Note=ACTA2 mutations predispose patients to a variety of diffuse and diverse vascular diseases, premature onset coronary artery disease (CAD), premature ischemic strokes and Moyamoya disease. {ECO:0000269|PubMed:19409525}.; DISEASE: Aortic aneurysm, familial thoracic 6 (AAT6) [MIM:611788]: A disease characterized by permanent dilation of the thoracic aorta usually due to degenerative changes in the aortic wall. It is primarily associated with a characteristic histologic appearance known as 'medial necrosis' or 'Erdheim cystic medial necrosis' in which there is degeneration and fragmentation of elastic fibers, loss of smooth muscle cells, and an accumulation of basophilic ground substance. {ECO:0000269|PubMed:17994018, ECO:0000269|PubMed:19409525, ECO:0000269|PubMed:19639654}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Moyamoya disease 5 (MYMY5) [MIM:614042]: A progressive cerebral angiopathy characterized by bilateral intracranial carotid artery stenosis and telangiectatic vessels in the region of the basal ganglia. The abnormal vessels resemble a 'puff of smoke' (moyamoya) on cerebral angiogram. Affected individuals can develop transient ischemic attacks and/or cerebral infarction, and rupture of the collateral vessels can cause intracranial hemorrhage. Hemiplegia of sudden onset and epileptic seizures constitute the prevailing presentation in childhood, while subarachnoid bleeding occurs more frequently in adults. {ECO:0000269|PubMed:20970362}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Multisystemic smooth muscle dysfunction syndrome (MSMDYS) [MIM:613834]: A syndrome characterized by dysfunction of smooth muscle cells throughout the body, leading to aortic and cerebrovascular disease, fixed dilated pupils, hypotonic bladder, malrotation, and hypoperistalsis of the gut and pulmonary hypertension. {ECO:0000269|PubMed:20734336}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.156
Intolerance Scores
- LoFtool
- 0.129
- RVIS EVS
- -0.27
- RVIS percentile EVS
- 33.97
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.834
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Low | Low |
| Primary Immunodeficiency | Medium | Low | Medium |
| Cancer | Medium | Low | Medium |