ACTBL2

actin beta like 2, the group of Actins

Basic information

Region (hg38): 5:57480017-57482811

Links

ENSG00000169067 ∙ NCBI:345651 ∙ OMIM:614835 ∙ HGNC:17780 ∙ Uniprot:Q562R1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ACTBL2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ACTBL2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			25	1		26
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	25	1	1

Variants in ACTBL2

This is a list of pathogenic ClinVar variants found in the ACTBL2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
5-57481597-C-T		not specified	Uncertain significance (Feb 07, 2023)
5-57481642-T-A		not specified	Uncertain significance (Jul 25, 2023)
5-57481654-T-C		not specified	Uncertain significance (Aug 16, 2021)
5-57481680-C-G		not specified	Uncertain significance (Jan 23, 2024)
5-57481680-C-T		not specified	Uncertain significance (Sep 17, 2021)
5-57481682-A-C		not specified	Uncertain significance (May 05, 2023)
5-57481821-G-A		not specified	Uncertain significance (Aug 30, 2021)
5-57481827-A-C		not specified	Uncertain significance (Apr 17, 2024)
5-57481856-C-G		not specified	Uncertain significance (Jan 25, 2023)
5-57481857-A-G		not specified	Uncertain significance (Oct 06, 2021)
5-57481900-T-G		not specified	Uncertain significance (Apr 09, 2024)
5-57481915-G-C		not specified	Uncertain significance (Mar 18, 2024)
5-57481938-C-A		not specified	Uncertain significance (Mar 16, 2024)
5-57481998-G-A		not specified	Likely benign (Oct 12, 2022)
5-57482076-C-G		not specified	Uncertain significance (Jan 26, 2022)
5-57482076-C-T		not specified	Uncertain significance (Feb 22, 2023)
5-57482083-T-C		not specified	Uncertain significance (Jul 25, 2023)
5-57482088-C-A		not specified	Uncertain significance (Jul 19, 2023)
5-57482175-C-A		not specified	Uncertain significance (Dec 14, 2022)
5-57482196-G-A		not specified	Uncertain significance (Apr 07, 2022)
5-57482208-T-C		not specified	Uncertain significance (Apr 06, 2024)
5-57482215-G-A		not specified	Uncertain significance (Apr 25, 2023)
5-57482340-A-G		not specified	Uncertain significance (Oct 06, 2021)
5-57482374-T-C		not specified	Uncertain significance (Sep 20, 2023)
5-57482401-G-A		not specified	Uncertain significance (May 17, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ACTBL2	protein_coding	protein_coding	ENST00000423391	1	2791

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
5.82e-16	0.000534	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.355	243	228	1.07	0.0000136	2466
Missense in Polyphen		71	61.048	1.163		596
Synonymous	0.537	80	86.3	0.926	0.00000511	770
Loss of Function	-1.99	19	11.7	1.63	8.24e-7	113

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. {ECO:0000250}.

Recessive Scores

• pRec: 0.626

Intolerance Scores

• loftool: 0.259
• rvis_EVS: 0.89
• rvis_percentile_EVS: 89.24

Haploinsufficiency Scores

• pHI: 0.615
• hipred: N
• hipred_score: 0.213

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.928

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Actbl2

Gene ontology

• Biological process: biological_process
• Cellular component: extracellular space;cytoplasm;cytoskeleton;extracellular exosome;glutamatergic synapse
• Molecular function: molecular_function;protein binding;ATP binding