ACTN2
protein-codingactinin alpha 2, the group of Actinins
Gene summary
Alpha actinins belong to the spectrin gene superfamily which represents a diverse group of cytoskeletal proteins, including the alpha and beta spectrins and dystrophins. Alpha actinin is an actin-binding protein with multiple roles in different cell types. In nonmuscle cells, the cytoskeletal isoform is found along microfilament bundles and adherens-type junctions, where it is involved in binding actin to the membrane. In contrast, skeletal, cardiac, and smooth muscle isoforms are localized to the Z-disc and analogous dense bodies, where they help anchor the myofibrillar actin filaments. This gene encodes a muscle-specific, alpha actinin isoform that is expressed in both skeletal and cardiac muscles. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2013]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~100.5 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AD
Disease ID:MONDO:0000992
Submitter: Genomics England PanelApp
Inheritance Pattern: AD
Disease ID:MONDO:0700349
Submitter: PanelApp Australia
Inheritance Pattern: AD
Disease ID:MONDO:0032852
Submitter: Ambry Genetics
Inheritance Pattern: AD
Disease ID:MONDO:0012808
Submitter: Ambry Genetics
Inheritance Pattern: AD
Disease ID:MONDO:0032852
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0015470
Submitter: Orphanet
Inheritance Pattern: AD
Disease ID:MONDO:0000591
Submitter: G2P
Inheritance Pattern: AD
Disease ID:MONDO:0032853
Submitter: Broad Center for Mendelian Genomics
Inheritance Pattern: Unknown
Disease ID:MONDO:0032853
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0700349
Submitter: ClinGen
ACTN2 was first reported in association with autosomal dominant hypertrophic cardiomyopathy in humans in 2006 (Theis et al, 2006, PMID 17097056), dilated cardiomyopathy in 2010 (Zimmerman et al, 2010, PMID 20474083), arrhythmias in 2010 (Chiu et al, 2010, PMID 20022194), left ventricular noncompaction in 2014 (Bagnall et al, 2014, PMID 25224718), restrictive cardiomyopathy in 2016 (Kostareva et al, 2016, PMID 27662471), and left-dominant arrhythmogenic cardiomyopathy in 2020 (Good et al, 2020, PMID 31956495). Cardiac phenotypes are associated with both gain and loss of function ACTN2 variants and do not always fit well into classical cardiomyopathy diagnosis. Individuals can show variable combinations of hypertrophy, dilatation, hyper/hypo contractility, and arrhythmias – where the phenotype can vary between individuals in the same family. A study found that patients with ACTN2 presented with varying degrees and types of arrhythmias, including left bundle branch block, atypical flutter, paroxysmal atrial fibrillation or supraventricular tachycardia, as well as atrial, ventricular, or supraventricular premature beats (Ranta-aho et al, 2022, PMID 36116040). In 2019, variants in ACTN2 were also reported in association with skeletal muscle myopathies (Savarese et al., PMID 30900782; Lornage et al., PMID 30701273). Clinical features reported in individuals with ACTN2-related skeletal myopathy include progressive distal and/or proximal muscle weakness, gait disturbance, muscle atrophy, and elevated creatine kinase (Iruzubieta et al., 2025, PMID 39812845). Inoue et al. (2021) (PMID 34471957) also report a homozygous missense variant in 4 patients from 3 unrelated families with muscle weakness and signs of muscle pathology, only 1 of whom had cardiac features. In addition, Lindholm et al. (2021) (PMID 34802252) report a homozygous premature truncating variant in a patient with cardiac disease. Respiratory insufficiency, facial weakness, contractures, and loss of ambulation have also been reported in more severe cases. Disease onset varies from early neonatal onset to adulthood. Signs on muscle pathology vary but may include fibre size variation, internalized nuclei, myofibrillar disorganization, type 1 fibre predominance, small cores, and other signs of structural disorganization. Cardiac involvement has been reported in a minority of cases. ACTN2 variants reported in association with skeletal myopathy include missense, in frame deletion, canonical splice, and C-terminal frameshift variants that result in protein extension (PMID 30900782, 30701273, 39812845; Ranta-Aho et al, 2024, PMID 39095936). Lornage et al. (2019) (PMID 30701273) created zebrafish expressing a mutant form of ACTN2 with a patient-identified missense variant, which showed locomotion defects and disordered skeletal muscle architecture. Mice expressing the same variant also showed abnormal Z-line organization in skeletal muscle as well as muscle weakness. A skeletal muscle case from 2024 (Donkervoort et al, 2024, PMID 38311799), included a recurring homozygous missense variant in ACTN2, this variant causes a recessive myopathy, and patients presented with asymmetric, progressive, proximal and distal lower extremity weakness. Another skeletal muscle case from 2019 (Savarese et al, 2019, PMID 30900782) showed 4 different families where 3 Spanish families presented with a heterozygous ACTN2 missense variant, and 1 Swedish family presented with a different heterozygous ACTN2 missense variant. The evidence for the gene disease relationship for ACTN2 suggests an autosomal dominant pattern of inheritance but there are some cases of recessive inheritance. The disease mechanism is currently unclear and may be variant-specific since some variants have been shown to result in protein aggregation while others do not have this effect (PMID 39095936). However, gain of function or dominant-negative effects are most likely; haploinsufficiency is not an established mechanism for ACTN2-related skeletal myopathy. This gene is thus associated with a phenotypic spectrum of cardiomyopathies, arrhythmias, and skeletal muscle myopathies. There is currently insufficient evidence to split these presentations based on mode of inheritance, phenotype, or disease mechanism. Per criteria outlined by the ClinGen Lumping and Splitting Working Group, all disease entities have been lumped into one inclusive disease entity, which is now being called ACTN2-related cardiac and skeletal myopathy. The inheritance pattern is primarily autosomal dominant, though at least three cases with homozygous variants have been reported (Lindholm et al, 2021, PMID 30701273; Inoue et al, 2021, PMID 34471957; Donkervoort et al, 2024, PMID 38311799). In summary, there is definitive evidence to support the relationship between ACTN2 and ACTN2-related cardiac and skeletal myopathy. This has been repeatedly demonstrated in both the research and clinical diagnostic settings and has been upheld over time. Based on curated literature, this gene can cause seemingly isolated left ventricular hypertrophy. This classification of ACTN2 for intrinsic cardiomyopathy (HCM and DCM) was originally approved by the ClinGen Hypertrophic Cardiomyopathy Gene Curation Expert Panel on April 10, 2018. It was reevaluated on May 10, 2023, and expanded to include LVNC, RCM, and ACM. As a result of this re-evaluation, the classification changed from moderate to definitive due to new evidence in the literature. This current curation was done on December 11, 2024, and expanded to include skeletal muscle myopathies in the phenotypic spectrum associated with variation in ACTN2.
Inheritance Pattern: AD
Disease ID:MONDO:0012808
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0000591
Submitter: Laboratory for Molecular Medicine
This gene-disease relationship has undergone rapid assessment. Classifications are based on preliminary review of gene-disease validity during analysis of genomic sequencing results.
Clinical Genomic Database (CGD)
Manifestation: Cardiovascular; Musculoskeletal
Intervention: Cardiovascular
Rationale: Preventive measures and medical management of cardiomyopathy may be helpful to help decrease morbidity and mortality
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to ACTN2 variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_001103.4. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 8 | 379 | 5 | 392 | ||
| missense | 2 | 9 | 714 | 159 | 8 | 892 |
| nonsense | 8 | 29 | 37 | |||
| start loss | 2 | 2 | ||||
| frameshift | 1 | 5 | 23 | 29 | ||
| splice donor/acceptor (+/-2bp) | 2 | 6 | 29 | 1 | 38 | |
| Total | 5 | 28 | 805 | 539 | 13 | 1390 |
Highest pathogenic variant AF is 0.000008054403
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_001094.1 | 21 | MANE Select | |
| Ensembl | ENSP00000355537.4 | 21 | MANE Select | |
| RefSeq | NP_001265272.1 | 21 | Standard | |
| Ensembl | ENSP00000443495.1 | 21 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| actn2b | Danio rerio | Structure: cardiac muscle cell Quality: decreased amount abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Arrhythmogenic right ventricular cardiomyopathy (ARVC) - Homo sapiens (human)
- Arrhythmogenic Right Ventricular Cardiomyopathy
- Striated Muscle Contraction
- NO-cGMP-PKG mediated Neuroprotection
- Signal Transduction
Biological Process
- MAPK cascade
- platelet degranulation
- cell adhesion
- microspike assembly
- muscle filament sliding
Molecular Function
- Ras guanyl-nucleotide exchange factor activity
- integrin binding
- calcium ion binding
- protein binding
- phosphatidylinositol-4,5-bisphosphate binding
Cellular Component
- extracellular region
- cytosol
- cytoskeleton
- actin filament
- plasma membrane
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000366578
- Coding exons
- 21
- Length
- 78178
- Individuals with no LoFs
- 125735
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 13
- Defined
- 125748
- p
- 0.0000517
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 1.29 | 446 | 530 | 0.842 | 0.0000355 | 5968 |
| Missense (PolyPhen) | 197 | 266.88 | 0.73815 | 3096 | ||
| Synonymous | 0.326 | 205 | 211 | 0.971 | 0.0000154 | 1631 |
| Loss of Function | 5.73 | 6 | 49.6 | 0.121 | 0.00000235 | 570 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.000062 | 0.000062 | rare |
| Latino/Admixed American | 0.000029 | 0.000029 | rare |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0.000054 | 0.000054 | rare |
| Finnish | 0 | 0.0 | absent |
| European (Non-Finnish) | 0.000071 | 0.000070 | rare |
| South Asian | 0.000065 | 0.000065 | rare |
| Other | 0 | 0.0 | absent |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.;
- Disease
- DISEASE: Cardiomyopathy, familial hypertrophic 23, with or without left ventricular non-compaction (CMH23) [MIM:612158]: A hereditary heart disorder characterized by ventricular hypertrophy, which is usually asymmetric and often involves the interventricular septum. The symptoms include dyspnea, syncope, collapse, palpitations, and chest pain. They can be readily provoked by exercise. The disorder has inter- and intrafamilial variability ranging from benign to malignant forms with high risk of cardiac failure and sudden cardiac death. {ECO:0000269|PubMed:20022194, ECO:0000269|PubMed:25173926}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Cardiomyopathy, dilated 1AA, with or without left ventricular non-compaction (CMD1AA) [MIM:612158]: A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. {ECO:0000269|PubMed:14567970, ECO:0000269|PubMed:25224718}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.399
Intolerance Scores
- LoFtool
- 0.0829
- RVIS EVS
- -1.72
- RVIS percentile EVS
- 2.47
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.927
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |