ADAM17
protein-codingADAM metallopeptidase domain 17, the group of ADAM metallopeptidase domain containing|CD molecules
Gene summary
This gene encodes a member of the ADAM (a disintegrin and metalloprotease domain) family. Members of this family are membrane-anchored proteins structurally related to snake venom disintegrins, and have been implicated in a variety of biologic processes involving cell-cell and cell-matrix interactions, including fertilization, muscle development, and neurogenesis. The encoded preproprotein is proteolytically processed to generate the mature protease. The encoded protease functions in the ectodomain shedding of tumor necrosis factor-alpha, in which soluble tumor necrosis factor-alpha is released from the membrane-bound precursor. This protease also functions in the processing of numerous other substrates, including cell adhesion proteins, cytokine and growth factor receptors and epidermal growth factor (EGF) receptor ligands, and plays a prominent role in the activation of the Notch signaling pathway. Elevated expression of this gene has been observed in specific cell types derived from psoriasis, rheumatoid arthritis, multiple sclerosis and Crohn's disease patients, suggesting that the encoded protein may play a role in autoimmune disease. Additionally, this protease may play a role in viral infection through its cleavage of ACE2, the cellular receptor for SARS-CoV and SARS-CoV-2. [provided by RefSeq, Aug 2020]
- TACE
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~68.2 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AR
Disease ID:MONDO:0013693
Submitter: Ambry Genetics
Inheritance Pattern: AR
Disease ID:MONDO:0013693
Submitter: G2P
Inheritance Pattern: AR
Disease ID:MONDO:0013693
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AR
Disease ID:MONDO:0013693
Submitter: ClinGen
*ADAM17* (also known as TACE, TNF-α converting enzyme) was first reported in relation to autosomal recessive inflammatory skin and bowel disease, neonatal, 1 in 2011 by Blaydon et al. (PMID: 22010916). NISBD1 is a severe multisystem disorder characterized by neonatal- or infantile-onset inflammatory skin disease, including erythroderma, pustular dermatitis, perioral and perianal erythema, together with chronic diarrhea/enteropathy, recurrent cutaneous and systemic infections, failure to thrive, and variable abnormalities of hair, nails, and immune function. *ADAM17* encodes a membrane-bound metalloprotease that mediates ectodomain shedding of numerous cell-surface proteins, including TNF-α, IL-6 receptor, and epidermal growth factor receptor (EGFR) ligands, thereby regulating epithelial barrier homeostasis, tissue repair, and inflammatory signaling. At least nine unique *ADAM17* variants have been reported in seven probands across seven publications (PMIDs: 22010916, 25804906, 32447396, 33953303, 34993966, 40968583, 42015567). The reported variant spectrum includes frameshift variants, a multi-exon deletion, a canonical splice-site variant, a synonymous splice-disrupting variant, and multiple missense variants. Several variants have direct functional evidence demonstrating impaired *ADAM17* activity, which abolish ectodomain shedding activity in cell-based assays. No clinical manifestations have been reported in heterozygous carriers from families with NISBD1-associated *ADAM17* variants. This gene-disease relationship is further supported by experimental evidence including biochemical function studies, expression analyses, functional alteration studies, and animal models. *ADAM17* expression is demonstrated in disease-relevant tissues including skin and intestine, and affected patient tissues show markedly reduced or absent *ADAM17* protein expression (PMID: 22010916). Patient-derived peripheral blood mononuclear cells exhibit defective TNF-α release despite preserved or increased production of other inflammatory cytokines, consistent with loss of *ADAM17* sheddase activity (PMID: 22010916). Mouse models with reduced or absent adam17 function recapitulate major components of the human phenotype, including epithelial abnormalities, hair defects, impaired intestinal homeostasis, defective epithelial regeneration, and increased susceptibility to colitis (PMIDs: 22236242, 26283731, 9812885, 20603312). In summary, there is definitive evidence supporting the relationship between *ADAM17* and autosomal recessive inflammatory skin and bowel disease, neonatal, 1. This relationship has been repeatedly demonstrated in both research and clinical diagnostic settings and has been upheld over time. This classification was approved by the ClinGen Primary Immune Regulatory Disorders Gene Curation Expert Panel (SOP Version 12). Of note, a single family with autosomal dominant hypotrichosis associated with a heterozygous *ADAM17* variant has been reported (PMID: 38771644); however, there is currently insufficient evidence to determine whether this represents a distinct disease entity or a milder allelic manifestation of *ADAM17* deficiency, and therefore this assertion was not included in the present curation.
Inheritance Pattern: AR
Disease ID:MONDO:0017411
Submitter: Orphanet
Inheritance Pattern: AD
Disease ID:MONDO:0005453
Submitter: ClinGen
*ADAM17* (formerly known as *TACE*) was FIRST reported in relation to autosomal dominant congenital heart disease in 2016 (Priest et al., PMID: 27058611). For this curation, variants in *ADAM17* have been reported in individuals with the following phenotypes: Tetralogy of Fallot and atrioventricular septal defect. Of note, this gene has also been implicated in neonatal inflammatory skin and bowel disease (OMIM:614328). This will be assessed separately. At least six unique missense variants have been reported in humans with congenital heart disease; however, three of them were too frequent to cause disease. Evidence supporting this gene-disease relationship includes case-level data. Variants in this gene have been reported in at least five probands in two publications (PMIDs: 27058611, 30610007). This gene-disease relationship is supported by animal models and expression studies (PMIDs: 9812885, 12773386, 14499647, 15936750, 33957124). In summary, there is limited evidence to support this gene-disease relationship. Although more evidence is needed to support a causal role, no convincing evidence has emerged that contradicts the gene-disease relationship. This classification was approved by the ClinGen Congenital Heart Disease GCEP on the meeting date 08/14/2023 (SOP Version 9).
Inheritance Pattern: AR
Disease ID:MONDO:0013693
Submitter: PanelApp Australia
Clinical Genomic Database (CGD)
Manifestation: Allergy/Immunology/Infectious; Cardiovascular; Dermatologic; Gastrointestinal
Intervention: Allergy/Immunology/Infectious; Cardiovascular
Rationale: Antiinfectious prophylaxis and early and aggressive treatment of infections may be beneficial; Individuals may also have cardiovascular manifestations, and surveillance may allow beneficial interventions
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to ADAM17 variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_003183.6. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 5 | 155 | 2 | 163 | |
| missense | 1 | 225 | 11 | 237 | ||
| nonsense | 4 | 3 | 1 | 8 | ||
| start loss | 0 | |||||
| frameshift | 11 | 1 | 11 | 23 | ||
| splice donor/acceptor (+/-2bp) | 2 | 6 | 6 | 14 | ||
| Total | 17 | 12 | 248 | 166 | 2 | 445 |
Highest pathogenic variant AF is 0.000008180093
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_003174.3 | 19 | MANE Select | |
| Ensembl | ENSP00000309968.3 | 19 | MANE Select | |
| RefSeq | NP_001369706.1 | 14 | Standard | |
| RefSeq | NP_001369707.1 | 12 | Standard |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Alzheimer,s disease - Homo sapiens (human)
- Epithelial cell signaling in Helicobacter pylori infection - Homo sapiens (human)
- Notch signaling pathway - Homo sapiens (human)
- NOTCH-Ncore
- Alzheimers Disease
Biological Process
- response to hypoxia
- positive regulation of protein phosphorylation
- neutrophil mediated immunity
- germinal center formation
- positive regulation of leukocyte chemotaxis
Molecular Function
- endopeptidase activity
- metalloendopeptidase activity
- Notch binding
- interleukin-6 receptor binding
- integrin binding
Cellular Component
- cytoplasm
- cytosol
- plasma membrane
- integral component of plasma membrane
- cell-cell junction
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000310823
- Coding exons
- 19
- Length
- 67307
- Individuals with no LoFs
- 125709
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 39
- Defined
- 125748
- p
- 0.000155
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 2.45 | 305 | 452 | 0.675 | 0.0000237 | 5500 |
| Missense (PolyPhen) | 55 | 149.71 | 0.36738 | 1847 | ||
| Synonymous | -0.0628 | 171 | 170 | 1.01 | 0.00000997 | 1468 |
| Loss of Function | 5.17 | 6 | 42.3 | 0.142 | 0.00000205 | 546 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.00012 | 0.00012 | rare |
| Latino/Admixed American | 0 | 0.0 | absent |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0.00017 | 0.00016 | rare |
| Finnish | 0.00051 | 0.00051 | rare |
| European (Non-Finnish) | 0.00018 | 0.00018 | rare |
| South Asian | 0.00010 | 0.000098 | rare |
| Other | 0 | 0.0 | absent |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Cleaves the membrane-bound precursor of TNF-alpha to its mature soluble form (PubMed:9034191). Responsible for the proteolytical release of soluble JAM3 from endothelial cells surface (PubMed:20592283). Responsible for the proteolytic release of several other cell-surface proteins, including p75 TNF- receptor, interleukin 1 receptor type II, p55 TNF-receptor, transforming growth factor-alpha, L-selectin, growth hormone receptor, MUC1 and the amyloid precursor protein (PubMed:12441351). Acts as an activator of Notch pathway by mediating cleavage of Notch, generating the membrane-associated intermediate fragment called Notch extracellular truncation (NEXT) (PubMed:24226769). Plays a role in the proteolytic processing of ACE2 (PubMed:24227843). {ECO:0000269|PubMed:12441351, ECO:0000269|PubMed:20592283, ECO:0000269|PubMed:24226769, ECO:0000269|PubMed:24227843, ECO:0000269|PubMed:9034191}.;
- Disease
- DISEASE: Inflammatory skin and bowel disease, neonatal, 1 (NISBD1) [MIM:614328]: A disorder characterized by inflammatory features with neonatal onset, involving the skin, hair, and gut. The skin lesions involve perioral and perianal erythema, psoriasiform erythroderma, with flares of erythema, scaling, and widespread pustules. Gastrointestinal symptoms include malabsorptive diarrhea that is exacerbated by intercurrent gastrointestinal infections. The hair is short or broken, and the eyelashes and eyebrows are wiry and disorganized. {ECO:0000269|PubMed:22010916}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.381
Intolerance Scores
- LoFtool
- 0.287
- RVIS EVS
- 0.6
- RVIS percentile EVS
- 82.78
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.970
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |