ADAM17

protein-coding

ADAM metallopeptidase domain 17, the group of ADAM metallopeptidase domain containing|CD molecules

Gene summary

This gene encodes a member of the ADAM (a disintegrin and metalloprotease domain) family. Members of this family are membrane-anchored proteins structurally related to snake venom disintegrins, and have been implicated in a variety of biologic processes involving cell-cell and cell-matrix interactions, including fertilization, muscle development, and neurogenesis. The encoded preproprotein is proteolytically processed to generate the mature protease. The encoded protease functions in the ectodomain shedding of tumor necrosis factor-alpha, in which soluble tumor necrosis factor-alpha is released from the membrane-bound precursor. This protease also functions in the processing of numerous other substrates, including cell adhesion proteins, cytokine and growth factor receptors and epidermal growth factor (EGF) receptor ligands, and plays a prominent role in the activation of the Notch signaling pathway. Elevated expression of this gene has been observed in specific cell types derived from psoriasis, rheumatoid arthritis, multiple sclerosis and Crohn's disease patients, suggesting that the encoded protein may play a role in autoimmune disease. Additionally, this protease may play a role in viral infection through its cleavage of ACE2, the cellular receptor for SARS-CoV and SARS-CoV-2. [provided by RefSeq, Aug 2020]

Previous symbols:
  • TACE

MANE transcript

NM_003183.6

Inheritance

AR, AD

ClinVar variants

P:29U:248B:168

Top phenotype

Inflammatory skin and bowel disease, neonatal 1

gnomAD constraint

pLI —, LoF o/e 0.14

Max pathogenic AF

—

Genomic locus

chr2:9,488,486-9,556,732

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~68.2 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

inflammatory skin and bowel disease, neonatal, 1MODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0013693

Submitter: Ambry Genetics

inflammatory skin and bowel disease, neonatal, 1DEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0013693

Submitter: G2P

inflammatory skin and bowel disease, neonatal, 1STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0013693

Submitter: Labcorp Genetics (formerly Invitae)

inflammatory skin and bowel disease, neonatal, 1DEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0013693

Submitter: ClinGen

*ADAM17* (also known as TACE, TNF-α converting enzyme) was first reported in relation to autosomal recessive inflammatory skin and bowel disease, neonatal, 1 in 2011 by Blaydon et al. (PMID: 22010916). NISBD1 is a severe multisystem disorder characterized by neonatal- or infantile-onset inflammatory skin disease, including erythroderma, pustular dermatitis, perioral and perianal erythema, together with chronic diarrhea/enteropathy, recurrent cutaneous and systemic infections, failure to thrive, and variable abnormalities of hair, nails, and immune function. *ADAM17* encodes a membrane-bound metalloprotease that mediates ectodomain shedding of numerous cell-surface proteins, including TNF-α, IL-6 receptor, and epidermal growth factor receptor (EGFR) ligands, thereby regulating epithelial barrier homeostasis, tissue repair, and inflammatory signaling. At least nine unique *ADAM17* variants have been reported in seven probands across seven publications (PMIDs: 22010916, 25804906, 32447396, 33953303, 34993966, 40968583, 42015567). The reported variant spectrum includes frameshift variants, a multi-exon deletion, a canonical splice-site variant, a synonymous splice-disrupting variant, and multiple missense variants. Several variants have direct functional evidence demonstrating impaired *ADAM17* activity, which abolish ectodomain shedding activity in cell-based assays. No clinical manifestations have been reported in heterozygous carriers from families with NISBD1-associated *ADAM17* variants. This gene-disease relationship is further supported by experimental evidence including biochemical function studies, expression analyses, functional alteration studies, and animal models. *ADAM17* expression is demonstrated in disease-relevant tissues including skin and intestine, and affected patient tissues show markedly reduced or absent *ADAM17* protein expression (PMID: 22010916). Patient-derived peripheral blood mononuclear cells exhibit defective TNF-α release despite preserved or increased production of other inflammatory cytokines, consistent with loss of *ADAM17* sheddase activity (PMID: 22010916). Mouse models with reduced or absent adam17 function recapitulate major components of the human phenotype, including epithelial abnormalities, hair defects, impaired intestinal homeostasis, defective epithelial regeneration, and increased susceptibility to colitis (PMIDs: 22236242, 26283731, 9812885, 20603312). In summary, there is definitive evidence supporting the relationship between *ADAM17* and autosomal recessive inflammatory skin and bowel disease, neonatal, 1. This relationship has been repeatedly demonstrated in both research and clinical diagnostic settings and has been upheld over time. This classification was approved by the ClinGen Primary Immune Regulatory Disorders Gene Curation Expert Panel (SOP Version 12). Of note, a single family with autosomal dominant hypotrichosis associated with a heterozygous *ADAM17* variant has been reported (PMID: 38771644); however, there is currently insufficient evidence to determine whether this represents a distinct disease entity or a milder allelic manifestation of *ADAM17* deficiency, and therefore this assertion was not included in the present curation.

neonatal inflammatory skin and bowel diseaseSUPPORTIVE

Inheritance Pattern: AR

Disease ID:MONDO:0017411

Submitter: Orphanet

congenital heart diseaseLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0005453

Submitter: ClinGen

*ADAM17* (formerly known as *TACE*) was FIRST reported in relation to autosomal dominant congenital heart disease in 2016 (Priest et al., PMID: 27058611). For this curation, variants in *ADAM17* have been reported in individuals with the following phenotypes: Tetralogy of Fallot and atrioventricular septal defect. Of note, this gene has also been implicated in neonatal inflammatory skin and bowel disease (OMIM:614328). This will be assessed separately. At least six unique missense variants have been reported in humans with congenital heart disease; however, three of them were too frequent to cause disease. Evidence supporting this gene-disease relationship includes case-level data. Variants in this gene have been reported in at least five probands in two publications (PMIDs: 27058611, 30610007). This gene-disease relationship is supported by animal models and expression studies (PMIDs: 9812885, 12773386, 14499647, 15936750, 33957124). In summary, there is limited evidence to support this gene-disease relationship. Although more evidence is needed to support a causal role, no convincing evidence has emerged that contradicts the gene-disease relationship. This classification was approved by the ClinGen Congenital Heart Disease GCEP on the meeting date 08/14/2023 (SOP Version 9).

inflammatory skin and bowel disease, neonatal, 1STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0013693

Submitter: PanelApp Australia

Clinical Genomic Database (CGD)

Inflammatory skin and bowel disease, neonatal 1AR

Manifestation: Allergy/Immunology/Infectious; Cardiovascular; Dermatologic; Gastrointestinal

Intervention: Allergy/Immunology/Infectious; Cardiovascular

Rationale: Antiinfectious prophylaxis and early and aggressive treatment of infections may be beneficial; Individuals may also have cardiovascular manifestations, and surveillance may allow beneficial interventions

Refs: 22010916Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to ADAM17 variants in ClinVar

7 Conditions Cataloged
Inflammatory skin and bowel disease, neonatal, 1Total: 519
Inborn genetic diseasesTotal: 77
not specifiedTotal: 64
not providedTotal: 47
ADAM17-related disorderTotal: 15
Anophthalmia-microphthalmia syndromeTotal: 1
Neonatal inflammatory skin and bowel diseaseTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_003183.6. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
5
clinvar
155
clinvar
2
clinvar
163
missense
1
clinvar
225
clinvar
11
clinvar
237
nonsense
4
clinvar
3
clinvar
1
clinvar
8
start loss
0
frameshift
11
clinvar
1
clinvar
11
clinvar
23
splice donor/acceptor (+/-2bp)
2
clinvar
6
clinvar
6
clinvar
14
Total17122481662445

Highest pathogenic variant AF is 0.000008180093

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 47 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_003183.6RefSeqNP_003174.319MANE Select
ENST00000310823.8EnsemblENSP00000309968.319MANE Select
NM_001382777.1RefSeqNP_001369706.114Standard
NM_001382778.1RefSeqNP_001369707.112Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Alzheimer,s disease - Homo sapiens (human)
  • Epithelial cell signaling in Helicobacter pylori infection - Homo sapiens (human)
  • Notch signaling pathway - Homo sapiens (human)
  • NOTCH-Ncore
  • Alzheimers Disease

Biological Process

  • response to hypoxia
  • positive regulation of protein phosphorylation
  • neutrophil mediated immunity
  • germinal center formation
  • positive regulation of leukocyte chemotaxis

Molecular Function

  • endopeptidase activity
  • metalloendopeptidase activity
  • Notch binding
  • interleukin-6 receptor binding
  • integrin binding

Cellular Component

  • cytoplasm
  • cytosol
  • plasma membrane
  • integral component of plasma membrane
  • cell-cell junction

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000310823
Coding exons
19
Length
67307
Individuals with no LoFs
125709
Homozygous LoFs
0
Heterozygous LoFs
39
Defined
125748
p
0.000155
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense2.453054520.6750.00002375500
Missense (PolyPhen)55149.710.367381847
Synonymous-0.06281711701.010.000009971468
Loss of Function5.17642.30.1420.00000205546

Population LoF Frequency

PopulationCAFp-valueStatus
African0.000120.00012rare
Latino/Admixed American00.0absent
Ashkenazi Jewish00.0absent
East Asian0.000170.00016rare
Finnish0.000510.00051rare
European (Non-Finnish)0.000180.00018rare
South Asian0.000100.000098rare
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Cleaves the membrane-bound precursor of TNF-alpha to its mature soluble form (PubMed:9034191). Responsible for the proteolytical release of soluble JAM3 from endothelial cells surface (PubMed:20592283). Responsible for the proteolytic release of several other cell-surface proteins, including p75 TNF- receptor, interleukin 1 receptor type II, p55 TNF-receptor, transforming growth factor-alpha, L-selectin, growth hormone receptor, MUC1 and the amyloid precursor protein (PubMed:12441351). Acts as an activator of Notch pathway by mediating cleavage of Notch, generating the membrane-associated intermediate fragment called Notch extracellular truncation (NEXT) (PubMed:24226769). Plays a role in the proteolytic processing of ACE2 (PubMed:24227843). {ECO:0000269|PubMed:12441351, ECO:0000269|PubMed:20592283, ECO:0000269|PubMed:24226769, ECO:0000269|PubMed:24227843, ECO:0000269|PubMed:9034191}.;
Disease
DISEASE: Inflammatory skin and bowel disease, neonatal, 1 (NISBD1) [MIM:614328]: A disorder characterized by inflammatory features with neonatal onset, involving the skin, hair, and gut. The skin lesions involve perioral and perianal erythema, psoriasiform erythroderma, with flares of erythema, scaling, and widespread pustules. Gastrointestinal symptoms include malabsorptive diarrhea that is exacerbated by intercurrent gastrointestinal infections. The hair is short or broken, and the eyelashes and eyebrows are wiry and disorganized. {ECO:0000269|PubMed:22010916}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.381

Intolerance Scores

LoFtool
0.287
RVIS EVS
0.6
RVIS percentile EVS
82.78

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.970

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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