ADGRG7
Basic information
Region (hg38): 3:100609601-100695479
Previous symbols: [ "GPR128" ]
Links
Phenotypes
GenCC
Source:
ClinVar
This is a list of variants' phenotypes submitted to
- not_specified (120 variants)
- not_provided (8 variants)
Variants pathogenicity by type
Statistics on ClinVar variants can assist in determining whether a specific variant type in the ADGRG7 gene is commonly pathogenic or not. These statistics are base on transcript: NM_000032787.3. Only rare variants are included in the table.
In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.
Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.
Effect | PathogenicP | Likely pathogenicLP | VUSVUS | Likely benignLB | BenignB | Sum |
---|---|---|---|---|---|---|
synonymous | 3 | |||||
missense | 106 | 13 | 120 | |||
nonsense | 0 | |||||
start loss | 0 | |||||
frameshift | 1 | |||||
splice donor/acceptor (+/-2bp) | 0 | |||||
Total | 0 | 0 | 107 | 14 | 3 |
GnomAD
Source:
Gene | Type | Bio Type | Transcript | Coding Exons | Length |
---|---|---|---|---|---|
ADGRG7 | protein_coding | protein_coding | ENST00000273352 | 16 | 85891 |
pLI Probability LOF Intolerant | pRec Probability LOF Recessive | Individuals with no LOFs | Individuals with Homozygous LOFs | Individuals with Heterozygous LOFs | Defined | p |
---|---|---|---|---|---|---|
8.04e-18 | 0.0568 | 125535 | 1 | 212 | 125748 | 0.000847 |
Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible in Transcript | |
---|---|---|---|---|---|---|
Missense | 0.377 | 401 | 423 | 0.948 | 0.0000217 | 5203 |
Missense in Polyphen | 104 | 121.1 | 0.85882 | 1686 | ||
Synonymous | -0.832 | 171 | 158 | 1.08 | 0.00000832 | 1552 |
Loss of Function | 0.962 | 30 | 36.3 | 0.828 | 0.00000172 | 451 |
LoF frequencies by population
Ethnicity | Sum of pLOFs | p |
---|---|---|
African & African-American | 0.00262 | 0.00262 |
Ashkenazi Jewish | 0.00 | 0.00 |
East Asian | 0.0000544 | 0.0000544 |
Finnish | 0.00 | 0.00 |
European (Non-Finnish) | 0.000778 | 0.000774 |
Middle Eastern | 0.0000544 | 0.0000544 |
South Asian | 0.00105 | 0.00101 |
Other | 0.00183 | 0.00179 |
dbNSFP
Source:
- Function
- FUNCTION: Orphan receptor.;
Recessive Scores
- pRec
- 0.0655
Intolerance Scores
- loftool
- rvis_EVS
- 0.81
- rvis_percentile_EVS
- 87.73
Haploinsufficiency Scores
- pHI
- 0.0488
- hipred
- N
- hipred_score
- 0.123
- ghis
Essentials
- essential_gene_CRISPR
- essential_gene_CRISPR2
- essential_gene_gene_trap
- N
- gene_indispensability_pred
- gene_indispensability_score
Mouse Genome Informatics
- Gene name
- Adgrg7
- Phenotype
- growth/size/body region phenotype; digestive/alimentary phenotype;
Gene ontology
- Biological process
- cell surface receptor signaling pathway;G protein-coupled receptor signaling pathway;adenylate cyclase-activating G protein-coupled receptor signaling pathway
- Cellular component
- integral component of plasma membrane;integral component of membrane
- Molecular function
- G protein-coupled receptor activity;protein binding