AGTR2
protein-codingangiotensin II receptor type 2, the group of Angiotensin receptors
Gene summary
The protein encoded by this gene belongs to the G-protein coupled receptor 1 family, and functions as a receptor for angiotensin II. It is an intergral membrane protein that is highly expressed in fetus and in neonates, but scantily in adult tissues, except brain, adrenal medulla, and atretic ovary. This receptor has been shown to mediate programmed cell death and this apoptotic function may play an important role in developmental biology and pathophysiology. Mutations in this gene are been associated with X-linked cognitive disability. Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) and SARS-CoV-2 infection results in down-regulation of angiotensin converting enzyme-2 (ACE2) receptors, the effects of which, triggers serious inflammatory lesions in the tissues involved, primarily in the lungs. The inflammatory reaction appears to be mediated by angiotensin II derivatives, including the angiotensin AT2 receptor which has been found to be upregulated in bronchoalveolar lavage samples from Coronavirus disease 2019 (COVID19) patients. [provided by RefSeq, Jul 2020]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~4.2 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: XL
Disease ID:MONDO:0019181
Submitter: Orphanet
Inheritance Pattern: XL
Disease ID:MONDO:0100148
Submitter: PanelApp Australia
Inheritance Pattern: XL
Disease ID:MONDO:0100148
Submitter: ClinGen
Variants in *AGTR2* have been reported in individuals presenting various neurodevelopmental phenotypes, including intellectual disability, autistic features, epileptic seizures, speech delay, restlessness, and hyperactivity, as early as 2002. Per criteria outlined by the ClinGen Lumping and Splitting guidelines, we found no difference in molecular mechanism, inheritance pattern, or phenotypic variability. Therefore, for the purposes of this curation, all of these features have been lumped into one disease entity, X-linked complex neurodevelopmental disorder. Although eight unique variants, including missense and truncating, have been reported in affected humans, the majority (six) have been ruled out from disease-causality based on high frequency in control populations (Piton et al., PMID 23871722), occurrence in unaffected males (Erdmann et al., PMID 14722754), non-segregation within a family (Bienvenu et al., PMID 12746399), and lack of enrichment in patients in a case-control study (Huang et al., PMID 16283672). Given that the two remaining variants are missense with no supporting functional evidence, and *AGTR2* was the only gene sequenced in each case, these variants were awarded 0 points. There are two *Agtr2* mouse models which collectively show altered neuronal spine morphology, spatial memory impairment, delayed learning, and reduced exploratory behavior (PMIDs: 18335189, 7477267). However, due to the scarcity of plausible reports of disease-causing variants in humans, the experimental evidence was not scored. In summary, the evidence supporting the relationship between *AGTR2* and X-linked complex neurodevelopmental disorder has been disputed and no valid evidence remains to support the claim. More evidence is needed to either support or entirely refute the role *AGTR2* plays in this disease. This classification was approved by the ClinGen Intellectual Disability and Autism Gene Curation Expert Panel on June 2, 2020 (SOP Version 7).
Clinical Genomic Database (CGD)
Manifestation: Neurologic
Intervention: General
Rationale: Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing
Comments: The evidence of variants as related to disease causation has been questioned due to subsequent population-based studies
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to AGTR2 variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_000686.5. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 4 | 3 | 7 | |||
| missense | 49 | 7 | 2 | 58 | ||
| nonsense | 2 | 2 | ||||
| start loss | 0 | |||||
| frameshift | 3 | 1 | 4 | |||
| splice donor/acceptor (+/-2bp) | 0 | |||||
| Total | 0 | 0 | 54 | 12 | 5 | 71 |
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_000677.2 | 1 | MANE Select | |
| Ensembl | ENSP00000360973.4 | 1 | MANE Select | |
| RefSeq | NP_001372553.1 | 1 | Standard | |
| Ensembl | ENSP00000505750.1 | 1 | Standard |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Agents Acting on the Renin-Angiotensin System Pathway, Pharmacodynamics
- Renin-angiotensin system - Homo sapiens (human)
- Adrenergic signaling in cardiomyocytes - Homo sapiens (human)
- Neuroactive ligand-receptor interaction - Homo sapiens (human)
- ACE Inhibitor Pathway, Pharmacodynamics
Biological Process
- blood vessel remodeling
- regulation of systemic arterial blood pressure by circulatory renin-angiotensin
- renin-angiotensin regulation of aldosterone production
- angiotensin-mediated vasodilation involved in regulation of systemic arterial blood pressure
- brain renin-angiotensin system
Molecular Function
- angiotensin type II receptor activity
- protein binding
- transcription factor binding
- peptide hormone binding
- receptor antagonist activity
Cellular Component
- extracellular region
- plasma membrane
- integral component of plasma membrane
- perinuclear region of cytoplasm
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000371906
- Coding exons
- 1
- Length
- 4251
- Individuals with no LoFs
- 125444
- Homozygous LoFs
- 72
- Heterozygous LoFs
- 138
- Defined
- 125654
- p
- 0.000836
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | -0.0723 | 139 | 137 | 1.02 | 0.0000101 | 2386 |
| Missense (PolyPhen) | 50 | 42.99 | 1.163 | 826 | ||
| Synonymous | -0.287 | 52 | 49.4 | 1.05 | 0.00000371 | 722 |
| Loss of Function | 1.03 | 4 | 6.93 | 0.577 | 4.96e-7 | 129 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.00053 | 0.00043 | rare |
| Latino/Admixed American | 0.00033 | 0.00026 | rare |
| Ashkenazi Jewish | 0.00013 | 0.000099 | rare |
| East Asian | 0.0032 | 0.0024 | notable |
| Finnish | 0.00013 | 0.000092 | rare |
| European (Non-Finnish) | 0.0017 | 0.0012 | notable |
| South Asian | 0.00047 | 0.00029 | rare |
| Other | 0.00044 | 0.00033 | rare |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Receptor for angiotensin II. Cooperates with MTUS1 to inhibit ERK2 activation and cell proliferation. {ECO:0000269|PubMed:15123706}.;
Recessive Scores
- pRec
- 0.425
Intolerance Scores
- LoFtool
- 0.659
- RVIS EVS
- 0.31
- RVIS percentile EVS
- 72.23
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.659
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |