AKAP5

A-kinase anchoring protein 5, the group of A-kinase anchoring proteins

Basic information

Region (hg38): 14:64465499-64474503

Links

ENSG00000179841 ∙ NCBI:9495 ∙ OMIM:604688 ∙ HGNC:375 ∙ Uniprot:P24588 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the AKAP5 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the AKAP5 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			24		2	26
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	24	0	3

Variants in AKAP5

This is a list of pathogenic ClinVar variants found in the AKAP5 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
14-64468422-G-A		not specified	Uncertain significance (Mar 29, 2022)
14-64468442-G-C		not specified	Uncertain significance (Mar 31, 2023)
14-64468518-A-C		not specified	Uncertain significance (Aug 17, 2022)
14-64468530-G-T		not specified	Uncertain significance (Dec 08, 2023)
14-64468561-C-T		not specified	Uncertain significance (Aug 09, 2021)
14-64468621-G-T		not specified	Uncertain significance (Nov 17, 2022)
14-64468626-G-T		not specified	Uncertain significance (Dec 16, 2023)
14-64468666-G-T		not specified	Uncertain significance (May 03, 2023)
14-64468680-A-C		not specified	Uncertain significance (Feb 06, 2024)
14-64468713-C-T		not specified	Uncertain significance (Jan 26, 2023)
14-64468777-C-T		not specified	Uncertain significance (Nov 22, 2021)
14-64468891-A-C		not specified	Uncertain significance (Jun 29, 2023)
14-64468892-G-C		not specified	Uncertain significance (Oct 12, 2021)
14-64468909-A-G		not specified	Uncertain significance (Jun 10, 2024)
14-64468911-G-C		not specified	Uncertain significance (Dec 01, 2022)
14-64468957-G-A			Benign (Dec 31, 2019)
14-64469022-A-T		not specified	Uncertain significance (Mar 16, 2022)
14-64469043-G-C		not specified	Uncertain significance (May 20, 2024)
14-64469053-A-C		not specified	Uncertain significance (Jun 30, 2023)
14-64469071-G-A		not specified	Uncertain significance (Apr 04, 2024)
14-64469076-C-G		not specified	Uncertain significance (Apr 12, 2024)
14-64469098-C-G		not specified	Uncertain significance (Apr 12, 2024)
14-64469143-T-C		not specified	Uncertain significance (Jun 24, 2022)
14-64469166-C-G		not specified	Uncertain significance (Mar 17, 2023)
14-64469236-G-A		not specified	Uncertain significance (Feb 01, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
AKAP5	protein_coding	protein_coding	ENST00000394718	1	9005

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.652	0.347	125679	0	2	125681	0.00000796

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.17	164	212	0.773	0.00000992	2811
Missense in Polyphen		28	42.15	0.6643		633
Synonymous	0.787	66	74.6	0.884	0.00000338	817
Loss of Function	2.68	2	12.1	0.166	5.08e-7	188

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000176	0.0000176
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May anchor the PKA protein to cytoskeletal and/or organelle-associated proteins, targeting the signal carried by cAMP to specific intracellular effectors. Association with to the beta2-adrenergic receptor (beta2-AR) not only regulates beta2-AR signaling pathway, but also the activation by PKA by switching off the beta2-AR signaling cascade.
• Pathway: G Protein Signaling Pathways;Developmental Biology;Metabolism;Glucagon-like Peptide-1 (GLP1) regulates insulin secretion;Regulation of insulin secretion;Neuronal System;ROBO receptors bind AKAP5;Signaling by ROBO receptors;Trafficking of AMPA receptors;Glutamate binding, activation of AMPA receptors and synaptic plasticity;Neurotransmitter receptors and postsynaptic signal transmission;Transmission across Chemical Synapses;Axon guidance;Integration of energy metabolism;Role of Calcineurin-dependent NFAT signaling in lymphocytes;Calcium signaling in the CD4+ TCR pathway (Consensus)

Intolerance Scores

• rvis_EVS: 0.73
• rvis_percentile_EVS: 86.08

Haploinsufficiency Scores

• pHI: 0.0917
• hipred: Y
• hipred_score: 0.643
• ghis: 0.430

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.312

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Akap5
• Phenotype: behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan); homeostasis/metabolism phenotype; endocrine/exocrine gland phenotype

Gene ontology

• Biological process: protein targeting;signal transduction;adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway;negative regulation of adenylate cyclase activity;chemical synaptic transmission;regulation of protein kinase A signaling;positive regulation of adenylate cyclase activity;positive regulation of protein localization to plasma membrane
• Cellular component: cytosol;plasma membrane;cytoplasmic side of plasma membrane;postsynaptic density;dendrite membrane;dendritic spine;membrane raft;excitatory synapse
• Molecular function: protein binding;calmodulin binding;adenylate cyclase binding;SH3 domain binding;protein phosphatase 2B binding;beta-2 adrenergic receptor binding;protein-containing complex scaffold activity;protein kinase A regulatory subunit binding;glutamate receptor binding;GABA receptor binding;protein kinase A binding;scaffold protein binding