ANKFN1

ankyrin repeat and fibronectin type III domain containing 1, the group of Ankyrin repeat domain containing|Fibronectin type III domain containing

Basic information

Region (hg38): 17:55882301-56517016

Links

ENSG00000153930 ∙ NCBI:162282 ∙ ∙ HGNC:26766 ∙ Uniprot:Q8N957 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ANKFN1 gene.

• not_specified (83 variants)
• not_provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ANKFN1 gene is commonly pathogenic or not. These statistics are base on transcript: NM_001370326.1. Only rare variants are included in the table.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Effect	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			81	2		83
nonsense						0
start loss						0
frameshift						0
splice donor/acceptor (+/-2bp)						0
Total	0	0	81	2	0

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ANKFN1	protein_coding	protein_coding	ENST00000318698	17	400702

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
2.09e-10	0.998	125658	0	90	125748	0.000358

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.559	383	415	0.923	0.0000215	5023
Missense in Polyphen		95	108.46	0.8759		1271
Synonymous	0.196	149	152	0.980	0.00000821	1426
Loss of Function	2.87	23	43.4	0.530	0.00000217	490

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000628	0.000627
Ashkenazi Jewish	0.0000993	0.0000992
East Asian	0.000438	0.000435
Finnish	0.000238	0.000231
European (Non-Finnish)	0.000472	0.000466
Middle Eastern	0.000438	0.000435
South Asian	0.000196	0.000196
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Intolerance Scores

• loftool: 0.793
• rvis_EVS: 0.6
• rvis_percentile_EVS: 82.83

Haploinsufficiency Scores

• pHI: 0.451
• hipred: Y
• hipred_score: 0.540
• ghis: 0.444

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0933

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ankfn1
• Phenotype: behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); hearing/vestibular/ear phenotype; growth/size/body region phenotype