ANKRD10

ankyrin repeat domain 10, the group of Ankyrin repeat domain containing

Basic information

Region (hg38): 13:110878540-110915069

Links

ENSG00000088448 ∙ NCBI:55608 ∙ ∙ HGNC:20265 ∙ Uniprot:Q9NXR5 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ANKRD10 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ANKRD10 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			29	3		32
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	29	3	0

Variants in ANKRD10

This is a list of pathogenic ClinVar variants found in the ANKRD10 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
13-110879666-C-A		not specified	Uncertain significance (Jun 17, 2024)
13-110879702-C-G		not specified	Uncertain significance (Oct 14, 2021)
13-110879774-G-A		not specified	Uncertain significance (Sep 03, 2024)
13-110879864-C-T		not specified	Uncertain significance (Oct 01, 2024)
13-110880022-C-T		not specified	Likely benign (Sep 26, 2024)
13-110880028-G-A		not specified	Uncertain significance (Oct 30, 2024)
13-110880042-G-C		not specified	Uncertain significance (Jun 26, 2023)
13-110880092-C-T		not specified	Uncertain significance (May 18, 2023)
13-110880094-G-A		not specified	Uncertain significance (May 13, 2024)
13-110883725-C-T		not specified	Uncertain significance (Jan 23, 2025)
13-110883733-T-C		not specified	Uncertain significance (Jan 19, 2024)
13-110883773-C-T		not specified	Likely benign (Jan 19, 2022)
13-110883775-G-A		not specified	Uncertain significance (Jan 17, 2024)
13-110893064-A-G		not specified	Uncertain significance (Feb 10, 2023)
13-110893100-T-C		not specified	Uncertain significance (May 15, 2024)
13-110893124-G-C		not specified	Uncertain significance (May 30, 2024)
13-110893127-G-A		not specified	Uncertain significance (May 14, 2024)
13-110893161-G-C		not specified	Uncertain significance (Jul 02, 2024)
13-110893207-T-C		not specified	Uncertain significance (Dec 03, 2021)
13-110893214-C-T		not specified	Uncertain significance (Apr 01, 2024)
13-110906039-T-C		not specified	Uncertain significance (Jun 16, 2024)
13-110906103-T-C		not specified	Uncertain significance (Sep 08, 2024)
13-110906118-C-T		not specified	Uncertain significance (Aug 15, 2023)
13-110910619-G-A		not specified	Uncertain significance (Oct 18, 2021)
13-110910631-T-C		not specified	Likely benign (Aug 07, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ANKRD10	protein_coding	protein_coding	ENST00000267339	6	36530

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.165	0.833	125740	0	8	125748	0.0000318

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.35	183	242	0.756	0.0000133	2750
Missense in Polyphen		43	75.949	0.56617		873
Synonymous	-0.502	113	106	1.06	0.00000700	835
Loss of Function	2.61	4	14.9	0.269	6.96e-7	178

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000648	0.0000615
Ashkenazi Jewish	0.0000992	0.0000992
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000176	0.0000176
Middle Eastern	0.00	0.00
South Asian	0.000135	0.000131
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Intolerance Scores

• loftool: 0.479
• rvis_EVS: 0.04
• rvis_percentile_EVS: 57.15

Haploinsufficiency Scores

• pHI: 0.534
• hipred: N
• hipred_score: 0.393
• ghis: 0.538

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.162

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ankrd10

Gene ontology

• Molecular function: protein binding