ANKRD16

ankyrin repeat domain 16, the group of Ankyrin repeat domain containing

Basic information

Region (hg38): 10:5861616-5889906

Links

ENSG00000134461 ∙ NCBI:54522 ∙ OMIM:618017 ∙ HGNC:23471 ∙ Uniprot:Q6P6B7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ANKRD16 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ANKRD16 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			26	1		27
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	26	1	0

Variants in ANKRD16

This is a list of pathogenic ClinVar variants found in the ANKRD16 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
10-5878177-T-C		not specified	Uncertain significance (May 20, 2024)
10-5878182-A-T		not specified	Uncertain significance (Nov 08, 2021)
10-5878200-C-A		not specified	Uncertain significance (Jun 06, 2023)
10-5880346-A-C		not specified	Uncertain significance (Oct 25, 2023)
10-5883053-C-T		not specified	Uncertain significance (Jul 19, 2022)
10-5883155-C-A		not specified	Uncertain significance (Jun 18, 2024)
10-5883980-C-T		not specified	Uncertain significance (May 05, 2023)
10-5884001-C-T		not specified	Uncertain significance (Mar 28, 2023)
10-5884030-A-G		not specified	Uncertain significance (Aug 17, 2022)
10-5884034-C-G		not specified	Likely benign (Dec 14, 2021)
10-5884034-C-T		not specified	Uncertain significance (Sep 25, 2023)
10-5884037-T-C		not specified	Uncertain significance (Feb 17, 2024)
10-5884040-C-T		not specified	Uncertain significance (Dec 20, 2023)
10-5885759-T-C		not specified	Uncertain significance (Mar 24, 2023)
10-5887852-G-A		not specified	Uncertain significance (Jul 05, 2023)
10-5887879-C-T		not specified	Uncertain significance (Nov 14, 2023)
10-5887925-G-A		not specified	Uncertain significance (Sep 14, 2023)
10-5887945-C-T		not specified	Uncertain significance (Feb 07, 2023)
10-5888054-T-A		not specified	Uncertain significance (Jan 08, 2024)
10-5889045-C-T		not specified	Uncertain significance (Jul 07, 2022)
10-5889074-C-T		not specified	Uncertain significance (Apr 18, 2023)
10-5889078-G-A		not specified	Uncertain significance (Jun 29, 2022)
10-5889127-G-C		not specified	Uncertain significance (Jul 09, 2021)
10-5889201-C-A		not specified	Uncertain significance (Jun 10, 2024)
10-5889228-A-G		not specified	Uncertain significance (Jul 13, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ANKRD16	protein_coding	protein_coding	ENST00000380094	7	28290

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
7.43e-10	0.144	125685	0	63	125748	0.000251

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.0406	192	194	0.992	0.00000975	2309
Missense in Polyphen		67	72.32	0.92644		870
Synonymous	-0.118	86	84.6	1.02	0.00000487	754
Loss of Function	0.377	15	16.7	0.900	9.25e-7	180

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000484	0.000460
Ashkenazi Jewish	0.00	0.00
East Asian	0.000564	0.000544
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000254	0.000246
Middle Eastern	0.000564	0.000544
South Asian	0.000362	0.000359
Other	0.000835	0.000815

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Required to prevent the misactivation of serine (Ser) with tRNA(Ala) by promoting the hydrolysis of Ser-mischarged tRNA(Ala), thereby playing a role in translational fidelity. Binds directly to the catalytic domain of AARS/AlaRS and captures Ser that is misactivated by AARS/AlaRS, preventing the charging of Ser adenylates to tRNA(Ala) and precluding Ser misincorporation in nascent peptides. {ECO:0000250|UniProtKB:A2AS55}.

Intolerance Scores

• loftool: 0.938
• rvis_EVS: 0.71
• rvis_percentile_EVS: 85.63

Haploinsufficiency Scores

• pHI: 0.0950
• hipred: N
• hipred_score: 0.197
• ghis: 0.431

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.639

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ankrd16
• Phenotype: behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); normal phenotype; mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan)

Gene ontology

• Biological process: tRNA modification
• Cellular component: nucleus;cytoplasm