ANKRD33B

ankyrin repeat domain 33B, the group of Ankyrin repeat domain containing

Basic information

Region (hg38): 5:10564070-10657816

Links

ENSG00000164236 ∙ NCBI:651746 ∙ ∙ HGNC:35240 ∙ Uniprot:A6NCL7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ANKRD33B gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ANKRD33B gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			56	5		61
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	56	5	0

Variants in ANKRD33B

This is a list of pathogenic ClinVar variants found in the ANKRD33B region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
5-10564520-C-T		not specified	Uncertain significance (Dec 01, 2023)
5-10564541-C-G		not specified	Uncertain significance (Oct 20, 2023)
5-10564576-T-C		not specified	Uncertain significance (Apr 20, 2024)
5-10564579-G-A		not specified	Uncertain significance (Apr 18, 2024)
5-10564582-G-C		not specified	Uncertain significance (Apr 14, 2025)
5-10564598-C-G		not specified	Uncertain significance (Jan 03, 2024)
5-10564648-T-G		not specified	Uncertain significance (Mar 19, 2024)
5-10564678-A-G		not specified	Uncertain significance (Jun 23, 2023)
5-10564712-G-C		not specified	Uncertain significance (Jul 30, 2024)
5-10564715-T-G		not specified	Uncertain significance (Sep 06, 2022)
5-10564757-A-G		not specified	Uncertain significance (Oct 21, 2024)
5-10564821-C-G		not specified	Uncertain significance (Oct 28, 2024)
5-10564822-C-A		not specified	Uncertain significance (Oct 26, 2021)
5-10564823-G-C		not specified	Uncertain significance (Oct 26, 2022)
5-10618336-G-A		not specified	Uncertain significance (Sep 27, 2021)
5-10618375-G-C		not specified	Uncertain significance (May 25, 2022)
5-10618394-G-A		not specified	Uncertain significance (Jan 15, 2025)
5-10618414-T-G		not specified	Uncertain significance (Feb 12, 2024)
5-10618433-A-C		not specified	Uncertain significance (Jan 03, 2025)
5-10618438-G-C		not specified	Uncertain significance (May 17, 2025)
5-10638034-C-T		not specified	Uncertain significance (May 13, 2024)
5-10638042-A-G		not specified	Uncertain significance (Apr 21, 2025)
5-10638114-A-G		not specified	Uncertain significance (Jun 28, 2024)
5-10638126-A-G		not specified	Uncertain significance (Nov 14, 2024)
5-10649266-G-T		not specified	Uncertain significance (Jun 29, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ANKRD33B	protein_coding	protein_coding	ENST00000296657	4	85867

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.432	0.566	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.09	209	313	0.667	0.0000212	3111
Missense in Polyphen		62	106.09	0.58442		1150
Synonymous	2.52	111	150	0.738	0.0000111	1075
Loss of Function	2.73	3	14.1	0.213	7.90e-7	147

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.442

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ankrd33b