ANKRD52

ankyrin repeat domain 52, the group of Ankyrin repeat domain containing|Protein phosphatase 6 regulatory subunits

Basic information

Region (hg38): 12:56237807-56258384

Links

ENSG00000139645 ∙ NCBI:283373 ∙ ∙ HGNC:26614 ∙ Uniprot:Q8NB46 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ANKRD52 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ANKRD52 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			35			35
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region					1	1
non coding						0
Total	0	0	35	0	1

Variants in ANKRD52

This is a list of pathogenic ClinVar variants found in the ANKRD52 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-56243174-C-T		not specified	Uncertain significance (Mar 02, 2023)
12-56243194-T-A		not specified	Uncertain significance (Oct 16, 2023)
12-56243225-C-T		not specified	Uncertain significance (Dec 17, 2023)
12-56243246-C-T		not specified	Uncertain significance (Dec 28, 2022)
12-56243251-G-A		not specified	Uncertain significance (Aug 02, 2021)
12-56243362-T-C		not specified	Uncertain significance (Dec 27, 2022)
12-56243856-C-T		not specified	Uncertain significance (Jul 14, 2021)
12-56244075-T-C		not specified	Uncertain significance (May 25, 2022)
12-56244378-G-A		not specified	Uncertain significance (Mar 23, 2022)
12-56244396-A-G		not specified	Uncertain significance (Feb 07, 2023)
12-56244686-C-T		not specified	Uncertain significance (Jan 18, 2023)
12-56244699-C-T		not specified	Uncertain significance (Oct 20, 2021)
12-56244718-C-T		not specified	Uncertain significance (Feb 02, 2024)
12-56244751-G-A		not specified	Uncertain significance (Dec 21, 2022)
12-56244790-G-A		not specified	Uncertain significance (May 18, 2023)
12-56245158-G-T		not specified	Uncertain significance (Nov 08, 2022)
12-56245187-T-C		not specified	Uncertain significance (Dec 01, 2022)
12-56245518-G-A		not specified	Uncertain significance (Nov 08, 2022)
12-56245578-C-T		not specified	Uncertain significance (Apr 30, 2024)
12-56247720-G-A		not specified	Uncertain significance (Nov 14, 2023)
12-56248119-G-A		not specified	Uncertain significance (Jul 12, 2022)
12-56248170-G-C		not specified	Uncertain significance (Sep 28, 2022)
12-56248217-T-C		not specified	Uncertain significance (May 15, 2024)
12-56248557-T-C		not specified	Uncertain significance (Dec 02, 2022)
12-56252034-G-A		not specified	Uncertain significance (Apr 07, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ANKRD52	protein_coding	protein_coding	ENST00000267116	28	20585

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.00	2.45e-8	124615	0	3	124618	0.0000120

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	4.49	324	645	0.502	0.0000385	6915
Missense in Polyphen		74	249.41	0.29671		2690
Synonymous	1.49	243	274	0.886	0.0000178	2222
Loss of Function	6.61	1	52.8	0.0189	0.00000282	593

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000291	0.0000291
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000558	0.0000556
Finnish	0.00	0.00
European (Non-Finnish)	0.00000890	0.00000885
Middle Eastern	0.0000558	0.0000556
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Intolerance Scores

• rvis_EVS: -0.91
• rvis_percentile_EVS: 10.03

Haploinsufficiency Scores

• pHI: 0.792
• hipred: Y
• hipred_score: 0.662
• ghis: 0.579

Essentials

• essential_gene_CRISPR: E
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.796

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ankrd52

Gene ontology

• Molecular function: protein binding