ANKRD9

ankyrin repeat domain 9, the group of Ankyrin repeat domain containing

Basic information

Region (hg38): 14:102501767-102509799

Links

ENSG00000156381 ∙ NCBI:122416 ∙ OMIM:618605 ∙ HGNC:20096 ∙ Uniprot:Q96BM1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ANKRD9 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ANKRD9 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			31			31
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	31	0	0

Variants in ANKRD9

This is a list of pathogenic ClinVar variants found in the ANKRD9 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
14-102506953-G-C		not specified	Uncertain significance (Dec 06, 2023)
14-102507025-C-T		not specified	Uncertain significance (Jul 05, 2023)
14-102507042-A-G		not specified	Uncertain significance (Jun 13, 2023)
14-102507120-C-T		not specified	Uncertain significance (Jan 30, 2024)
14-102507211-G-A		not specified	Uncertain significance (Jun 22, 2021)
14-102507213-T-C		not specified	Uncertain significance (May 02, 2023)
14-102507226-C-A		not specified	Uncertain significance (Jun 07, 2023)
14-102507250-C-T		not specified	Uncertain significance (Jun 05, 2023)
14-102507256-A-G		not specified	Uncertain significance (Oct 04, 2022)
14-102507304-G-A		not specified	Uncertain significance (Apr 20, 2024)
14-102507309-G-A		not specified	Uncertain significance (Dec 02, 2022)
14-102507382-C-T		not specified	Uncertain significance (May 17, 2023)
14-102507402-A-G		not specified	Uncertain significance (Jul 06, 2021)
14-102507426-C-A		not specified	Uncertain significance (May 01, 2022)
14-102507486-G-T		not specified	Uncertain significance (Feb 16, 2023)
14-102507499-G-A		not specified	Uncertain significance (Oct 12, 2021)
14-102507501-C-A		not specified	Uncertain significance (Dec 12, 2023)
14-102507502-G-C		not specified	Uncertain significance (May 09, 2023)
14-102507504-A-C		not specified	Uncertain significance (May 09, 2022)
14-102507517-G-A		not specified	Uncertain significance (Mar 24, 2023)
14-102507558-G-A		not specified	Uncertain significance (Dec 19, 2023)
14-102507574-C-T		not specified	Uncertain significance (Apr 19, 2023)
14-102507577-C-G		not specified	Uncertain significance (Sep 01, 2021)
14-102507610-T-C		not specified	Uncertain significance (Aug 01, 2022)
14-102507699-C-T		not specified	Uncertain significance (Mar 28, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ANKRD9	protein_coding	protein_coding	ENST00000286918	1	2958

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.294	0.633	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.90	64	123	0.519	0.0000109	1876
Missense in Polyphen		25	45.676	0.54733		717
Synonymous	2.21	43	65.8	0.653	0.00000629	758
Loss of Function	1.36	1	3.91	0.256	1.70e-7	67

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Pathway: Post-translational protein modification;Metabolism of proteins;Neddylation (Consensus)

Haploinsufficiency Scores

• pHI: 0.179
• hipred: N
• hipred_score: 0.354
• ghis: 0.663

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.257

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ankrd9
• Phenotype: immune system phenotype; skeleton phenotype; hematopoietic system phenotype; adipose tissue phenotype (the observable morphological and physiological characteristics of mammalian fat tissue that are manifested through development and lifespan); growth/size/body region phenotype

Gene ontology

• Biological process: post-translational protein modification;protein localization to plasma membrane
• Cellular component: cytosol;membrane;axon initial segment
• Molecular function: ion channel binding