ANP32B

acidic nuclear phosphoprotein 32 family member B, the group of ANP32 acidic nuclear phosphoproteins

Basic information

Region (hg38): 9:97983341-98015943

Links

ENSG00000136938 ∙ NCBI:10541 ∙ OMIM:619823 ∙ HGNC:16677 ∙ Uniprot:Q92688 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Transcripts

Transcript IDs starting with ENST are treated as Ensembl, all others as RefSeq. Showing 4 of 11.

Transcript ID	Protein ID	Coding exons	MANE Select	MANE Plus Clinical
NM_006401.3	NP_006392.1	7	yes	-
ENST00000339399.5	ENSP00000345848.4	7	yes	-
ENST00000903803.1	ENSP00000573862.1	7	-	-
ENST00000903804.1	ENSP00000573863.1	5	-	-

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ANP32B gene.

• not_specified (21 variants)
• not_provided (4 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ANP32B gene is commonly pathogenic or not. These statistics are base on transcript: NM_006401.3. Only rare variants are included in the table.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Effect	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				2	1	3
missense			21		1	22
nonsense						0
start loss						0
frameshift						0
splice donor/acceptor (+/-2bp)						0
Total	0	0	21	2	2

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ANP32B	protein_coding	protein_coding	ENST00000339399	7	32583

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
		0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.27	82	121	0.677	0.00000575	1675
Missense in Polyphen		12	26.757	0.44848		404
Synonymous	0.393	44	47.4	0.927	0.00000262	411
Loss of Function	3.26	1	14.3	0.0697	8.42e-7	187

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Multifunctional protein working as a cell cycle progression factor as well as a cell survival factor. Required for the progression from the G1 to the S phase. Anti-apoptotic protein which functions as a caspase-3 inhibitor. Has no phosphatase 2A (PP2A) inhibitor activity (By similarity). Exhibits histone chaperone properties, stimulating core histones to assemble into a nucleosome. {ECO:0000250, ECO:0000269|PubMed:20538007}.
• Pathway: miR-targeted genes in epithelium - TarBase;miR-targeted genes in lymphocytes - TarBase;miR-targeted genes in muscle cell - TarBase;miR-targeted genes in squamous cell - TarBase (Consensus)

Recessive Scores

• pRec: 0.109

Intolerance Scores

• rvis_EVS: -0.16
• rvis_percentile_EVS: 41.25

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: K
• gene_indispensability_pred: E
• gene_indispensability_score: 0.890

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: vasculature development;nucleosome assembly;activation of cysteine-type endopeptidase activity involved in apoptotic process;ventricular system development;negative regulation of cell differentiation;positive regulation of protein export from nucleus;inner ear development;roof of mouth development
• Cellular component: nucleus;nucleolus;cytoplasm;extracellular exosome
• Molecular function: protein binding;histone binding;RNA polymerase binding