ANXA11

annexin A11, the group of Annexins

Basic information

Region (hg38): 10:80150889-80205572

Previous symbols: [ "ANX11" ]

Links

ENSG00000122359NCBI:311OMIM:602572HGNC:535Uniprot:P50995AlphaFoldGenCCjaxSfariGnomADPubmedClinVar

Phenotypes

GenCC

Source: genCC

  • amyotrophic lateral sclerosis type 23 (Strong), mode of inheritance: AD
  • amyotrophic lateral sclerosis type 23 (Moderate), mode of inheritance: AD
  • amyotrophic lateral sclerosis (Supportive), mode of inheritance: AD
  • amyotrophic lateral sclerosis type 23 (Strong), mode of inheritance: AD
  • inclusion body myopathy and brain white matter abnormalities (Limited), mode of inheritance: AD
  • amyotrophic lateral sclerosis type 23 (Definitive), mode of inheritance: AD

Clinical Genomic Database

Source: CGD

ConditionInheritanceIntervention CategoriesIntervention/Rationale Manifestation CategoriesReferences
Amytrophic lateral sclerosis 23; Inclusion body myopathy and brain white matter abnormalitiesADGeneralGenetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testingMusculoskeletal; Neurologic28469040; 34048612

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ANXA11 gene.

  • ANXA11-related disorder (1 variants)
  • not provided (1 variants)
  • Oculopharyngeal muscular dystrophy (1 variants)
  • Amyotrophic lateral sclerosis type 23 (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ANXA11 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
1
clinvar
45
clinvar
10
clinvar
56
missense
2
clinvar
2
clinvar
112
clinvar
14
clinvar
8
clinvar
138
nonsense
7
clinvar
7
start loss
1
clinvar
1
frameshift
6
clinvar
1
clinvar
7
inframe indel
4
clinvar
1
clinvar
5
splice donor/acceptor (+/-2bp)
4
clinvar
4
splice region
8
9
3
20
non coding
1
clinvar
27
clinvar
40
clinvar
68
Total 2 2 136 88 58

Variants in ANXA11

This is a list of pathogenic ClinVar variants found in the ANXA11 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
10-80155849-C-A ANXA11-related disorder Likely benign (Apr 26, 2019)3039513
10-80155860-T-C Uncertain significance (May 09, 2021)1437809
10-80155890-C-T Amyotrophic lateral sclerosis Uncertain significance (Jan 01, 2022)1343335
10-80155891-G-A Uncertain significance (Oct 23, 2021)1490682
10-80155900-C-T Uncertain significance (Feb 22, 2023)2152084
10-80155902-G-T Uncertain significance (Dec 09, 2022)2504950
10-80155930-G-A Likely benign (Jun 26, 2023)2984910
10-80156034-T-C Benign (May 10, 2021)1248519
10-80157564-G-A Inclusion body myopathy and brain white matter abnormalities Benign (Dec 05, 2021)1693167
10-80157634-C-T Likely benign (Mar 06, 2023)2741085
10-80157636-C-T Uncertain significance (Oct 10, 2023)2976926
10-80157637-G-A Benign (Dec 04, 2023)1643018
10-80157642-G-A ANXA11-related disorder • Inborn genetic diseases Uncertain significance (Dec 09, 2023)1366578
10-80157649-C-G Uncertain significance (Mar 09, 2021)1413347
10-80157650-G-A Likely benign (Mar 24, 2023)1931024
10-80157656-C-T Likely benign (May 17, 2022)1966438
10-80157665-GC-G Uncertain significance (May 04, 2023)2861142
10-80157674-C-T Likely benign (Jun 01, 2021)1576115
10-80157675-C-T Amyotrophic lateral sclerosis type 23 Uncertain significance (Sep 03, 2023)1398399
10-80157676-G-A Uncertain significance (Sep 26, 2023)1352634
10-80157695-G-A Likely benign (Jun 04, 2023)2869128
10-80157706-C-T Uncertain significance (Nov 14, 2023)1954376
10-80157717-C-T Uncertain significance (Apr 12, 2022)1966979
10-80157730-T-C Benign (Feb 01, 2024)718544
10-80157734-A-C Uncertain significance (Aug 10, 2022)1977900

GnomAD

Source: gnomAD

GeneTypeBio TypeTranscript Coding Exons Length
ANXA11protein_codingprotein_codingENST00000438331 1454684
pLI Probability
LOF Intolerant
pRec Probability
LOF Recessive
Individuals with
no LOFs
Individuals with
Homozygous LOFs
Individuals with
Heterozygous LOFs
Defined p
4.70e-100.8131256770711257480.000282
Z-Score Observed Expected Observed/Expected Mutation Rate Total Possible in Transcript
Missense-0.2493112991.040.00001793197
Missense in Polyphen118123.950.952021243
Synonymous-0.01921211211.000.000007721023
Loss of Function1.641928.50.6680.00000153316

LoF frequencies by population

EthnicitySum of pLOFs p
African & African-American0.001110.00110
Ashkenazi Jewish0.000.00
East Asian0.0008790.000870
Finnish0.00004740.0000462
European (Non-Finnish)0.0001600.000141
Middle Eastern0.0008790.000870
South Asian0.0002370.000229
Other0.0001630.000163

dbNSFP

Source: dbNSFP

Function
FUNCTION: Binds specifically to calcyclin in a calcium-dependent manner (By similarity). Required for midbody formation and completion of the terminal phase of cytokinesis. {ECO:0000250, ECO:0000269|PubMed:15197175}.;
Disease
DISEASE: Amyotrophic lateral sclerosis 23 (ALS23) [MIM:617839]: A form of amyotrophic lateral sclerosis, a neurodegenerative disorder affecting upper motor neurons in the brain and lower motor neurons in the brain stem and spinal cord, resulting in fatal paralysis. Sensory abnormalities are absent. The pathologic hallmarks of the disease include pallor of the corticospinal tract due to loss of motor neurons, presence of ubiquitin-positive inclusions within surviving motor neurons, and deposition of pathologic aggregates. The etiology of amyotrophic lateral sclerosis is likely to be multifactorial, involving both genetic and environmental factors. The disease is inherited in 5-10% of the cases. ALS23 is an autosomal dominant form with incomplete penetrance. {ECO:0000269|PubMed:28469040}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Pathway
TCR (Consensus)

Recessive Scores

pRec
0.139

Intolerance Scores

loftool
0.933
rvis_EVS
0.49
rvis_percentile_EVS
79.61

Haploinsufficiency Scores

pHI
0.167
hipred
Y
hipred_score
0.570
ghis
0.458

Essentials

essential_gene_CRISPR
N
essential_gene_CRISPR2
N
essential_gene_gene_trap
N
gene_indispensability_pred
E
gene_indispensability_score
0.978

Gene Damage Prediction

AllRecessiveDominant
MendelianHighHighHigh
Primary ImmunodeficiencyHighHighHigh
CancerHighHighHigh

Mouse Genome Informatics

Gene name
Anxa11
Phenotype

Gene ontology

Biological process
phagocytosis;cytokinetic process;response to calcium ion
Cellular component
nuclear envelope;nucleoplasm;cytoplasm;spindle;cytosol;membrane;midbody;melanosome;specific granule;azurophil granule;phagocytic vesicle;collagen-containing extracellular matrix;extracellular exosome
Molecular function
RNA binding;calcium ion binding;protein binding;calcium-dependent phospholipid binding;phosphatidylethanolamine binding;MHC class II protein complex binding;S100 protein binding;calcium-dependent protein binding