ARAP1-AS2

ARAP1 antisense RNA 2, the group of Antisense RNAs

Basic information

Region (hg38): 11:72700474-72705607

Links

ENSG00000245148 ∙ NCBI:100506020 ∙ ∙ HGNC:39994 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ARAP1-AS2 gene.

• Inborn genetic diseases (8 variants)
• not provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ARAP1-AS2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			8		1	9
Total	0	0	8	0	1

Variants in ARAP1-AS2

This is a list of pathogenic ClinVar variants found in the ARAP1-AS2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-72701654-C-T		not specified	Uncertain significance (Mar 01, 2025)
11-72701663-C-T		not specified	Uncertain significance (Feb 28, 2024)
11-72701715-G-A		not specified	Uncertain significance (Feb 12, 2025)
11-72701757-G-T		not specified	Uncertain significance (Aug 10, 2021)
11-72701762-A-G		not specified	Uncertain significance (Dec 17, 2024)
11-72701793-C-T			Benign (Apr 16, 2018)
11-72702913-C-T		not specified	Likely benign (Feb 05, 2025)
11-72702914-G-A		not specified	Uncertain significance (Aug 05, 2024)
11-72702914-G-C		not specified	Uncertain significance (Mar 29, 2022)
11-72702968-C-T		not specified	Uncertain significance (Jan 02, 2025)
11-72702976-G-A		not specified	Uncertain significance (Apr 24, 2024)
11-72703033-G-A		not specified	Uncertain significance (Jul 06, 2021)
11-72704192-C-T		not specified	Uncertain significance (Mar 04, 2024)
11-72704195-C-T		not specified	Uncertain significance (Dec 09, 2023)
11-72704240-G-C		not specified	Uncertain significance (May 04, 2022)
11-72704279-G-A		not specified	Uncertain significance (Nov 23, 2022)
11-72704289-C-G		not specified	Uncertain significance (Dec 16, 2023)
11-72704301-G-A		not specified	Uncertain significance (Nov 21, 2022)
11-72704310-C-T		not specified	Uncertain significance (Jan 20, 2025)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP