ARHGAP11B

Rho GTPase activating protein 11B, the group of Rho GTPase activating proteins

Basic information

Region (hg38): 15:30624494-30649529

Previous symbols: [ "FAM7B1" ]

Links

ENSG00000285077 ∙ NCBI:89839 ∙ OMIM:616310 ∙ HGNC:15782 ∙ Uniprot:Q3KRB8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ARHGAP11B gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ARHGAP11B gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			22	3		25
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	22	3	0

Variants in ARHGAP11B

This is a list of pathogenic ClinVar variants found in the ARHGAP11B region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-30626874-C-G		not specified	Uncertain significance (Mar 01, 2024)
15-30626900-G-A		not specified	Uncertain significance (Jan 10, 2023)
15-30626929-A-G		not specified	Uncertain significance (May 21, 2024)
15-30630710-T-C		not specified	Uncertain significance (Sep 09, 2024)
15-30630737-C-T		not specified	Uncertain significance (May 18, 2023)
15-30630746-C-T		not specified	Likely benign (May 05, 2023)
15-30633500-G-A		not specified	Uncertain significance (Mar 21, 2023)
15-30633519-A-G		not specified	Uncertain significance (Oct 06, 2024)
15-30633523-A-C		not specified	Uncertain significance (Jul 09, 2024)
15-30633536-G-A		not specified	Uncertain significance (Mar 29, 2023)
15-30633548-C-T		not specified	Uncertain significance (May 02, 2024)
15-30634180-A-T		not specified	Uncertain significance (Jan 31, 2025)
15-30634181-T-A		not specified	Uncertain significance (May 27, 2022)
15-30634198-T-C		not specified	Uncertain significance (Jan 31, 2025)
15-30634318-C-G		not specified	Uncertain significance (Dec 30, 2024)
15-30634323-G-A		not specified	Uncertain significance (Jan 16, 2024)
15-30634362-G-A		not specified	Uncertain significance (Jun 26, 2024)
15-30634377-C-T		not specified	Uncertain significance (Mar 01, 2025)
15-30634380-G-C		not specified	Uncertain significance (Jan 02, 2025)
15-30634393-T-G		not specified	Uncertain significance (Nov 09, 2023)
15-30635121-T-C		not specified	Uncertain significance (Jan 26, 2022)
15-30635159-G-A		not specified	Uncertain significance (Jun 18, 2021)
15-30635488-G-A		not specified	Uncertain significance (Apr 20, 2024)
15-30635490-G-A		not specified	Likely benign (Nov 06, 2024)
15-30635491-T-A		not specified	Uncertain significance (May 22, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Hominin-specific protein that promotes development and evolutionary expansion of the brain neocortex (PubMed:25721503). Able to promote amplification of basal progenitors in the subventricular zone, producing more neurons during fetal corticogenesis (PubMed:25721503). Does not possess GTPase activator activity (PubMed:25721503). {ECO:0000269|PubMed:25721503}.
• Pathway: Signal Transduction;Rho GTPase cycle;Signaling by Rho GTPases (Consensus)

Intolerance Scores

• loftool: 0.780
• rvis_EVS: 0.17
• rvis_percentile_EVS: 65.56

Haploinsufficiency Scores

• pHI: 0.115
• hipred: N
• hipred_score: 0.255

Essentials

• essential_gene_CRISPR: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: signal transduction;cerebral cortex development;positive regulation of GTPase activity;regulation of small GTPase mediated signal transduction
• Cellular component: cytosol
• Molecular function: GTPase activator activity