ARHGAP23

Rho GTPase activating protein 23, the group of PDZ domain containing|Pleckstrin homology domain containing|Rho GTPase activating proteins

Basic information

Region (hg38): 17:38419280-38512385

Links

ENSG00000275832 ∙ NCBI:57636 ∙ OMIM:610590 ∙ HGNC:29293 ∙ Uniprot:Q9P227 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ARHGAP23 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ARHGAP23 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				2		2
missense			124	2		126
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	124	4	0

Variants in ARHGAP23

This is a list of pathogenic ClinVar variants found in the ARHGAP23 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-38428528-C-T		not specified	Uncertain significance (Feb 14, 2023)
17-38428541-C-T		not specified	Uncertain significance (Oct 12, 2022)
17-38458133-C-G		not specified	Uncertain significance (Jan 17, 2024)
17-38458166-C-T		not specified	Uncertain significance (May 06, 2022)
17-38458168-C-A		not specified	Uncertain significance (Jul 27, 2021)
17-38458190-A-G		not specified	Uncertain significance (Oct 20, 2021)
17-38458195-G-A		not specified	Uncertain significance (Jul 21, 2021)
17-38460923-C-T		not specified	Uncertain significance (Oct 21, 2021)
17-38462921-A-G		not specified	Uncertain significance (Feb 27, 2023)
17-38463350-A-G		not specified	Uncertain significance (Mar 21, 2023)
17-38463356-C-T		not specified	Uncertain significance (Jun 05, 2023)
17-38466264-C-T		not specified	Uncertain significance (Jun 17, 2022)
17-38466317-A-G		not specified	Uncertain significance (Nov 09, 2022)
17-38466321-C-T		not specified	Uncertain significance (Aug 30, 2022)
17-38466344-A-G		not specified	Uncertain significance (Sep 29, 2023)
17-38466345-G-A		not specified	Uncertain significance (May 17, 2023)
17-38466374-C-T		not specified	Likely benign (Jul 05, 2023)
17-38466392-C-T		not specified	Uncertain significance (Jun 05, 2024)
17-38466425-A-G		not specified	Uncertain significance (Feb 10, 2022)
17-38466434-C-T		not specified	Uncertain significance (Sep 17, 2021)
17-38466468-C-T		not specified	Uncertain significance (Dec 20, 2023)
17-38466476-C-T		not specified	Uncertain significance (Jun 07, 2023)
17-38466483-C-T		not specified	Uncertain significance (Feb 10, 2022)
17-38466509-C-T		not specified	Uncertain significance (Jun 22, 2021)
17-38466510-G-A		not specified	Uncertain significance (Aug 30, 2021)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

• Function: FUNCTION: GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state. {ECO:0000250}.
• Pathway: Signal Transduction;Rho GTPase cycle;Signaling by Rho GTPases (Consensus)

Recessive Scores

• pRec: 0.0964

Haploinsufficiency Scores

• pHI: 0.327

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.589

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Arhgap23
• Phenotype: growth/size/body region phenotype; behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan)

Gene ontology

• Biological process: signal transduction;positive regulation of GTPase activity;regulation of small GTPase mediated signal transduction
• Cellular component: cytosol;extracellular exosome
• Molecular function: GTPase activator activity