ASB10

protein-coding

ankyrin repeat and SOCS box containing 10, the group of Ankyrin repeat domain containing

Gene summary

The protein encoded by this gene is a member of the ankyrin repeat and SOCS box-containing (ASB) family of proteins. The SOCS box serves to couple suppressor of cytokine signaling (SOCS) proteins and their binding partners with the elongin B and C complex, possibly targeting them for degradation. Multiple alternatively spliced transcript variants have been described for this gene. [provided by RefSeq, Dec 2008]

Previous symbols:
  • GLC1F

MANE transcript

NM_001142459.2

Inheritance

AD

ClinVar variants

U:123B:48

Top phenotype

Glaucoma 1, open angle, F

gnomAD constraint

pLI —, LoF o/e 1.09

Max pathogenic AF

—

Genomic locus

chr7:151,175,698-151,187,832

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~12.1 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

glaucoma 1, open angle, FLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0011311

Submitter: PanelApp Australia

glaucoma 1, open angle, FLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0011311

Submitter: ClinGen

The *ASB10* locus was first reported in relation to open-angle glaucoma in 2012 (Pasutto et al., PMID: 22156576), following an earlier linkage study that mapped primary open angle glaucoma within a large, multi-generation family to the relevant genomic region on chromosome 7q35-q36 (PMID: 10037570). Other case-control studies found significant enrichment of *ASB10* missense variants among glaucoma cases relative to controls, with some cohorts of patients exhibiting normal tension (PMID: 20309402) and others high ocular tension (PMID: 22156576, PMID: 26713451). However, this enrichment did not prove to be reproducible in other cohorts (PMID: 22798626, PMID: 31522561). A follow-up study with targeted genotyping of *ASB10* in one family reported 9 affected individuals harboring a synonymous variant in the coding region confirmed to be absent from 3 unaffected individuals (PMID: 22156576). Affected individuals were found to express a smaller *ASB10* transcript with skipping of exon 3, resulting in a frameshift and premature stop codon (PMID: 22156576). Affected family members were diagnosed at a broad range of ages (25 years to 70 years and exhibited elevated intraocular pressure, optic disc cupping with optic cup-disc ratios >0.6 in at least one eye, gonioscopy showing an iridocorneal angle >40 degrees, and in some cases visual field defects characteristic of glaucomatous damage (PMID: 10037570). While this reported family introduced the possibility of variants in *ASB10* as a cause of monogenic disease, case-control studies performing *ASB10* genotyping in glaucoma patient cohorts have not identified other disease-associated variants with high penetrance or demonstrated impact on the gene product. Genotyping in most cases was limited to the *ASB10* locus, and other loci were not investigated for potential modifiers. In one family with multiple affected and some unaffected members harboring a missense variant in *ASB10*, a homozygous individual was observed to be more severely affected than the heterozygous siblings (PMID: 26713451). Per criteria outlined by the ClinGen Lumping & Splitting Working Group, the mode of inheritance was found to be consistent across most of the asserted cases, despite the phenotypic heterogeneity of their clinical presentation. These factors provided a rationale for this curation to lump the diverse cases under a single disease entity, referred to as glaucoma 1, open angle, F (MONDO:0011311). This curation scored seven potentially deleterious variants (five missense, one nonsense, and one synonymous), which have been collectively reported in eight probands in two publications (PMID: 22156576, PMID: 26713451). Genotyping of potential causative loci was limited to *ASB10* in most cases. In one case, co-segregation of the synonymous variant with disease in a family with genotyping of all genes within the linkage region was scored as part of this gene-disease relationship (PMID: 22156576). Seven out of eight probands harbored one variant allele while one harbored a homozygous variant within the *ASB10* locus. The mechanism of pathogenicity in some cases may be monoallelic loss of *ASB10* function, as the synonymous variant was associated exon skipping and premature termination, while the nonsense variant was predicted to trigger nonsense-mediated decay (PMID: 22156576). On the other hand, many of the candidate variants have been down-scored due to relatively high frequencies in control databases or detection among both cases and unaffected controls. These findings indicate that while some variants may contribute to the glaucoma susceptibility through a multifactorial mechanism, they are likely insufficient to cause glaucoma on their own. Some scoring was assigned to case-control studies based on the reproducible enrichment of *ASB10* variants among cases relative to controls (PMID: 22156576, PMID: 20309402, PMID: 26713451, PMID: 22798626, PMID: 31522561). Additional experiments will be required to evaluate the potential impact of missense variants on *ASB10* function and/or the development of glaucoma. Additional case reports with more comprehensive genotyping of glaucoma-associated loci will be required to confirm that *ASB10*-related disease occurs in the absence of variants in other genes. Evaluation of this gene-disease association considered biochemical studies of the ASB10 gene product, a component of a ubiquitin ligase complex that also includes CUL5, RBX2, and UBC (PMID: 24337577). ASB10 also co-localizes with HSP70 and components of the proteasome (PMID: 23901248). These findings are consistent with a role of ASB10 in the ubiquitin- and proteasome-mediated degradation pathway. *ASB10* mRNA and protein were found to be normally expressed in the iris, trabecular meshwork, Schlemm's canal, and other ocular tissues (PMID: 30239781), however, its levels are higher in skeletal muscle and cardiac tissues (PMID: 11509662). Transient *ASB10* silencing in cultured anterior segment exhibited ~50% reduction in flow rate / outflow relative to a non-targeting shRNA control. This tissue defect may be a match to the increased intraocular pressure observed in some of the human patients (PMID: 22156576). Interestingly, the same effect can be triggered by proteasome inhibition (PMID: 23901248). Overall, experimental evidence on *ASB10* is consistent with but not highly supportive of a role in open-angle glaucoma. In summary, both supportive and contradictory evidence have been found relevant to the asserted association between *ASB10* and glaucoma 1, open angle, F. The absence of more complete genotyping of the asserted cases to exclude variants in other potential causative loci and the limited availability of experimental evidence at this time to functionally characterize candidate variants have led to a Limited classification. While *ASB10* variants may be enriched in glaucoma cases relative to controls, additional case reports with more comprehensive genotyping of glaucoma-associated loci will be required to determine whether these variants can act as a monogenic cause of disease or contribute to glaucoma through a polygenic mechanism. Murine or other animal models of *Asb10* disruption will also inform the future re-classification of this gene-disease relationship. This classification was approved by the ClinGen Glaucoma and Neuro-Ophthalmology Gene Curation Expert Panel on March 16th, 2023 (SOP Version 9).

glaucoma 1, open angle, FLIMITED

Inheritance Pattern: Unknown

Disease ID:MONDO:0011311

Submitter: Labcorp Genetics (formerly Invitae)

Clinical Genomic Database (CGD)

Glaucoma 1, open angle, FAD

Manifestation: Ophthalmologic

Intervention: Ophthalmologic

Rationale: Open-angle glaucoma is typically asymptomatic until late stages, when irreversible nerve damage has already taken place; Agents that may contribute to glaucoma should be avoided

Refs: 22156576Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to ASB10 variants in ClinVar

4 Conditions Cataloged
not specifiedTotal: 99
not providedTotal: 69
Glaucoma 1, open angle, FTotal: 43
ASB10-related disorderTotal: 7

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_001142459.2. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
6
clinvar
14
clinvar
7
clinvar
27
missense
114
clinvar
19
clinvar
7
clinvar
140
nonsense
1
clinvar
1
clinvar
2
start loss
0
frameshift
2
clinvar
2
splice donor/acceptor (+/-2bp)
0
Total001233414171
Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 13 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_001142459.2RefSeqNP_001135931.25MANE Select
ENST00000420175.3EnsemblENSP00000391137.25MANE Select
NM_001142460.1RefSeqNP_001135932.24Standard
NM_080871.4RefSeqNP_543147.25Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Post-translational protein modification
  • Metabolism of proteins
  • Immune System
  • Adaptive Immune System
  • Antigen processing: Ubiquitination & Proteasome degradation

Biological Process

  • protein ubiquitination
  • intracellular signal transduction
  • post-translational protein modification

Cellular Component

  • nucleus
  • cytoplasm
  • cytosol

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000420175
Coding exons
5
Length
12135
Individuals with no LoFs
125530
Homozygous LoFs
1
Heterozygous LoFs
125
Defined
125656
p
0.000501
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense-0.3193213051.050.00002072920
Missense (PolyPhen)8277.5831.0569815
Synonymous-0.2151381351.020.000008951070
Loss of Function-0.3201715.61.099.15e-7165

Population LoF Frequency

PopulationCAFp-valueStatus
African0.00100.00099notable
Latino/Admixed American0.000240.00017rare
Ashkenazi Jewish00.0absent
East Asian0.00340.0033notable
Finnish0.000730.00065rare
European (Non-Finnish)0.000200.00018rare
South Asian0.000170.00016rare
Other0.000500.00049rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.;
Disease
DISEASE: Glaucoma 1, open angle, F (GLC1F) [MIM:603383]: A form of primary open angle glaucoma (POAG). POAG is characterized by a specific pattern of optic nerve and visual field defects. The angle of the anterior chamber of the eye is open, and usually the intraocular pressure is increased. However, glaucoma can occur at any intraocular pressure. The disease is generally asymptomatic until the late stages, by which time significant and irreversible optic nerve damage has already taken place. {ECO:0000269|PubMed:22156576}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.0970

Intolerance Scores

LoFtool
0.786
RVIS EVS
0.2
RVIS percentile EVS
67.46

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
N
Indispensability score
0.0449

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumHigh
CancerMediumMediumMedium
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