ASB13

ankyrin repeat and SOCS box containing 13, the group of Ankyrin repeat domain containing

Basic information

Region (hg38): 10:5638867-5666595

Links

ENSG00000196372 ∙ NCBI:79754 ∙ OMIM:615055 ∙ HGNC:19765 ∙ Uniprot:Q8WXK3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ASB13 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ASB13 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			19			19
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	19	0	0

Variants in ASB13

This is a list of pathogenic ClinVar variants found in the ASB13 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
10-5640734-G-A		not specified	Uncertain significance (May 03, 2023)
10-5640788-C-A		not specified	Uncertain significance (Jan 26, 2023)
10-5641787-C-G		not specified	Uncertain significance (Jan 02, 2025)
10-5641847-C-T		not specified	Uncertain significance (Jan 03, 2024)
10-5641850-G-T		not specified	Uncertain significance (Mar 04, 2025)
10-5641884-C-T		not specified	Uncertain significance (Jan 17, 2025)
10-5641911-C-A		not specified	Uncertain significance (Feb 23, 2023)
10-5641914-C-T		not specified	Uncertain significance (Jul 06, 2021)
10-5648985-C-T		not specified	Uncertain significance (Oct 03, 2023)
10-5649069-C-T		not specified	Uncertain significance (Dec 14, 2023)
10-5649072-C-T		not specified	Uncertain significance (Mar 10, 2025)
10-5651219-T-G		not specified	Uncertain significance (Dec 17, 2023)
10-5651224-G-A		not specified	Uncertain significance (Jan 30, 2024)
10-5651228-C-T		not specified	Uncertain significance (Nov 10, 2024)
10-5651304-G-C		not specified	Uncertain significance (Dec 13, 2023)
10-5651305-C-A		not specified	Uncertain significance (Jan 04, 2025)
10-5651332-G-A		not specified	Uncertain significance (Aug 01, 2024)
10-5652864-T-C		not specified	Uncertain significance (Jul 09, 2024)
10-5652906-C-T		not specified	Uncertain significance (Oct 27, 2022)
10-5652946-C-G		not specified	Uncertain significance (Sep 25, 2024)
10-5653000-T-A		not specified	Uncertain significance (Jan 29, 2024)
10-5653002-T-C		not specified	Uncertain significance (Aug 01, 2024)
10-5653042-C-A		not specified	Uncertain significance (Oct 03, 2022)
10-5666541-C-T		not specified	Uncertain significance (Jul 26, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ASB13	protein_coding	protein_coding	ENST00000357700	6	27729

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
6.52e-10	0.0378	125634	0	114	125748	0.000453

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.151	171	177	0.968	0.0000119	1781
Missense in Polyphen		57	68.515	0.83194		657
Synonymous	0.212	83	85.5	0.971	0.00000706	570
Loss of Function	-0.535	13	11.1	1.17	5.58e-7	128

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000166	0.000166
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.000785	0.000693
European (Non-Finnish)	0.000936	0.000765
Middle Eastern	0.0000544	0.0000544
South Asian	0.000131	0.000131
Other	0.000375	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.
• Pathway: Post-translational protein modification;Metabolism of proteins;Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation;Neddylation (Consensus)

Recessive Scores

• pRec: 0.120

Intolerance Scores

• loftool: 0.431
• rvis_EVS: -0.18
• rvis_percentile_EVS: 40.36

Haploinsufficiency Scores

• pHI: 0.240
• hipred: N
• hipred_score: 0.369
• ghis: 0.508

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.885

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Asb13

Gene ontology

• Biological process: protein ubiquitination;intracellular signal transduction;post-translational protein modification
• Cellular component: cytosol
• Molecular function: protein binding