ASB18

ankyrin repeat and SOCS box containing 18, the group of Ankyrin repeat domain containing

Basic information

Region (hg38): 2:236193458-236264409

Links

ENSG00000182177 ∙ NCBI:401036 ∙ ∙ HGNC:19770 ∙ Uniprot:Q6ZVZ8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ASB18 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ASB18 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			34			34
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	34	0	0

Variants in ASB18

This is a list of pathogenic ClinVar variants found in the ASB18 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-236194888-T-C		not specified	Uncertain significance (Jun 24, 2022)
2-236194973-T-C		not specified	Uncertain significance (Jul 20, 2021)
2-236194976-G-A		not specified	Uncertain significance (Feb 22, 2023)
2-236194987-C-T		not specified	Uncertain significance (Nov 23, 2016)
2-236195035-G-A		not specified	Uncertain significance (Jun 07, 2022)
2-236196292-T-C		not specified	Uncertain significance (Jul 06, 2021)
2-236196314-C-G		not specified	Uncertain significance (Sep 13, 2023)
2-236214363-T-C		not specified	Uncertain significance (Aug 22, 2023)
2-236214487-C-A		not specified	Uncertain significance (May 09, 2023)
2-236214495-T-G		not specified	Uncertain significance (May 09, 2023)
2-236214514-C-T		not specified	Uncertain significance (Feb 12, 2024)
2-236214525-A-C		not specified	Uncertain significance (Sep 28, 2021)
2-236214532-G-A		not specified	Uncertain significance (May 30, 2024)
2-236214535-G-A		not specified	Uncertain significance (Sep 13, 2023)
2-236214578-G-T		not specified	Uncertain significance (Jul 30, 2023)
2-236214592-C-G		not specified	Uncertain significance (Nov 03, 2022)
2-236214604-C-T		not specified	Uncertain significance (Dec 04, 2023)
2-236214616-C-T			Uncertain significance (-)
2-236214702-G-A		not specified	Uncertain significance (Jun 05, 2023)
2-236214741-C-T		not specified	Uncertain significance (Jun 18, 2021)
2-236214769-C-G		not specified	Uncertain significance (Nov 23, 2016)
2-236214817-C-T		not specified	Uncertain significance (Apr 20, 2023)
2-236214825-C-T		not specified	Uncertain significance (Jun 07, 2024)
2-236214841-C-A		not specified	Uncertain significance (Mar 06, 2023)
2-236214846-T-G		not specified	Uncertain significance (Mar 28, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ASB18	protein_coding	protein_coding	ENST00000409749	6	70958

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
6.19e-8	0.142	124440	0	205	124645	0.000823

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.615	150	173	0.868	0.00000974	2893
Missense in Polyphen		54	59.416	0.90885		920
Synonymous	0.0519	82	82.6	0.993	0.00000544	1003
Loss of Function	-0.0305	11	10.9	1.01	4.84e-7	166

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0110	0.0109
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.000124	0.000124
Middle Eastern	0.00	0.00
South Asian	0.000229	0.000229
Other	0.000165	0.000165

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.
• Pathway: Post-translational protein modification;Metabolism of proteins;Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation;Neddylation (Consensus)

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.374

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	High	High	High
Primary Immunodeficiency	High	High	High
Cancer	High	High	High

Mouse Genome Informatics

• Gene name: Asb18

Gene ontology

• Biological process: protein ubiquitination;intracellular signal transduction;post-translational protein modification
• Cellular component: cytosol