ASB5

ankyrin repeat and SOCS box containing 5, the group of Ankyrin repeat domain containing

Basic information

Region (hg38): 4:176213672-176277571

Links

ENSG00000164122 ∙ NCBI:140458 ∙ OMIM:615050 ∙ HGNC:17180 ∙ Uniprot:Q8WWX0 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ASB5 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ASB5 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			20			20
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	20	0	0

Variants in ASB5

This is a list of pathogenic ClinVar variants found in the ASB5 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
4-176215655-A-C		not specified	Uncertain significance (May 17, 2023)
4-176215685-C-T		not specified	Uncertain significance (Jul 19, 2023)
4-176215694-A-G		not specified	Uncertain significance (Feb 28, 2024)
4-176215710-A-G		not specified	Uncertain significance (Mar 02, 2023)
4-176216892-T-A		not specified	Uncertain significance (Feb 28, 2023)
4-176216976-G-A		not specified	Uncertain significance (Aug 09, 2021)
4-176221167-G-A		not specified	Uncertain significance (Oct 02, 2023)
4-176221212-G-C		not specified	Uncertain significance (Oct 13, 2021)
4-176221462-C-T		not specified	Uncertain significance (Feb 28, 2024)
4-176221584-A-G		not specified	Uncertain significance (Feb 28, 2024)
4-176221587-G-A		not specified	Uncertain significance (Dec 12, 2023)
4-176222411-C-T		not specified	Uncertain significance (Oct 12, 2021)
4-176222420-C-T		not specified	Uncertain significance (Nov 18, 2023)
4-176225269-A-G		not specified	Uncertain significance (Aug 30, 2022)
4-176225272-A-G		not specified	Uncertain significance (Apr 22, 2024)
4-176225285-C-T		not specified	Uncertain significance (Dec 18, 2023)
4-176225291-G-A		not specified	Uncertain significance (May 27, 2022)
4-176225324-A-T		not specified	Uncertain significance (Dec 01, 2022)
4-176225332-G-A		not specified	Uncertain significance (Jul 28, 2021)
4-176268978-A-G		not specified	Uncertain significance (Jan 03, 2024)
4-176269045-G-A		not specified	Uncertain significance (Dec 16, 2023)
4-176269062-T-C		not specified	Uncertain significance (Jun 04, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ASB5	protein_coding	protein_coding	ENST00000296525	7	63899

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
3.07e-13	0.0213	125687	0	59	125746	0.000235

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.219	192	184	1.05	0.00000987	2120
Missense in Polyphen		78	79.146	0.98552		877
Synonymous	0.323	69	72.5	0.952	0.00000424	658
Loss of Function	-0.0895	19	18.6	1.02	0.00000111	199

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000445	0.000445
Ashkenazi Jewish	0.00	0.00
East Asian	0.000109	0.000109
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000274	0.000273
Middle Eastern	0.000109	0.000109
South Asian	0.000336	0.000294
Other	0.000333	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May play a role in the initiation of arteriogenesis (By similarity). {ECO:0000250}.
• Pathway: Post-translational protein modification;Metabolism of proteins;Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation;Neddylation (Consensus)

Recessive Scores

• pRec: 0.126

Intolerance Scores

• loftool: 0.902
• rvis_EVS: -0.51
• rvis_percentile_EVS: 21.56

Haploinsufficiency Scores

• pHI: 0.355
• hipred: N
• hipred_score: 0.282
• ghis: 0.551

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.329

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Asb5

Gene ontology

• Biological process: protein ubiquitination;intracellular signal transduction;post-translational protein modification;positive regulation of protein catabolic process
• Cellular component: cytosol