ASB6

ankyrin repeat and SOCS box containing 6, the group of Ankyrin repeat domain containing

Basic information

Region (hg38): 9:129634604-129642169

Links

ENSG00000148331 ∙ NCBI:140459 ∙ OMIM:615051 ∙ HGNC:17181 ∙ Uniprot:Q9NWX5 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ASB6 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ASB6 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			28	2		30
nonsense			1	1		2
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			5			5
Total	0	0	34	3	0

Variants in ASB6

This is a list of pathogenic ClinVar variants found in the ASB6 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
9-129635357-G-A		not specified	Uncertain significance (Oct 02, 2023)
9-129635367-G-A		not specified	Uncertain significance (Oct 18, 2021)
9-129635397-T-G		not specified	Uncertain significance (Dec 28, 2023)
9-129635439-A-G		not specified	Uncertain significance (Oct 06, 2022)
9-129635445-A-G		not specified	Uncertain significance (Dec 12, 2023)
9-129637813-C-T		not specified	Uncertain significance (Aug 01, 2022)
9-129637870-C-G		not specified	Uncertain significance (Oct 25, 2023)
9-129637905-C-T		not specified	Uncertain significance (Apr 25, 2022)
9-129637906-G-A		not specified	Uncertain significance (Jun 06, 2023)
9-129637938-G-A		not specified	Uncertain significance (Feb 16, 2023)
9-129637957-G-C		not specified	Uncertain significance (Feb 10, 2023)
9-129637989-T-C		not specified	Uncertain significance (Jan 23, 2023)
9-129638026-C-T		not specified	Uncertain significance (Oct 26, 2022)
9-129638083-T-C		not specified	Uncertain significance (Dec 11, 2023)
9-129638115-G-A		not specified	Uncertain significance (Nov 27, 2023)
9-129638118-C-G		not specified	Uncertain significance (May 16, 2024)
9-129638139-C-T		not specified	Uncertain significance (Sep 29, 2023)
9-129638200-C-T		not specified	Uncertain significance (Jun 29, 2022)
9-129638233-G-A		not specified	Uncertain significance (Sep 29, 2023)
9-129638308-C-T		not specified	Uncertain significance (Jun 17, 2024)
9-129638325-C-T		not specified	Likely benign (Aug 12, 2021)
9-129638347-G-C		not specified	Uncertain significance (May 27, 2022)
9-129638348-G-C		not specified	Uncertain significance (May 27, 2022)
9-129638381-C-T			Likely benign (Feb 01, 2023)
9-129638421-G-A		not specified	Uncertain significance (Nov 15, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ASB6	protein_coding	protein_coding	ENST00000277458	6	5274

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000805	0.937	125712	0	36	125748	0.000143

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.05	222	271	0.820	0.0000173	2740
Missense in Polyphen		102	119.13	0.85619		1264
Synonymous	-0.846	134	122	1.10	0.00000856	869
Loss of Function	1.65	7	13.5	0.517	6.58e-7	156

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000537	0.000528
Ashkenazi Jewish	0.00	0.00
East Asian	0.000164	0.000163
Finnish	0.00	0.00
European (Non-Finnish)	0.000100	0.0000967
Middle Eastern	0.000164	0.000163
South Asian	0.000137	0.000131
Other	0.000341	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Probable substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000269|PubMed:16325183}.
• Pathway: Post-translational protein modification;Metabolism of proteins;Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation;Neddylation (Consensus)

Recessive Scores

• pRec: 0.110

Intolerance Scores

• loftool: 0.656
• rvis_EVS: -0.09
• rvis_percentile_EVS: 46.99

Haploinsufficiency Scores

• pHI: 0.164
• hipred: N
• hipred_score: 0.346
• ghis: 0.550

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.946

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Asb6

Gene ontology

• Biological process: protein ubiquitination;intracellular signal transduction;post-translational protein modification
• Cellular component: cytosol
• Molecular function: protein binding