ASB7

ankyrin repeat and SOCS box containing 7, the group of Ankyrin repeat domain containing

Basic information

Region (hg38): 15:100602589-100651701

Links

ENSG00000183475 ∙ NCBI:140460 ∙ OMIM:615052 ∙ HGNC:17182 ∙ Uniprot:Q9H672 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ASB7 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ASB7 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					3	3
missense			11			11
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region					1	1
non coding						0
Total	0	0	11	0	3

Variants in ASB7

This is a list of pathogenic ClinVar variants found in the ASB7 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-100612310-A-C		not specified	Uncertain significance (Jul 22, 2024)
15-100612323-A-G		not specified	Uncertain significance (Mar 07, 2024)
15-100629438-T-C			Benign (Jan 30, 2018)
15-100629446-C-G		not specified	Uncertain significance (Mar 15, 2024)
15-100629448-G-A		not specified	Uncertain significance (Mar 01, 2023)
15-100629606-C-T			Benign (May 16, 2018)
15-100629743-A-G		not specified	Uncertain significance (Oct 29, 2021)
15-100629892-C-T		not specified	Uncertain significance (Sep 06, 2022)
15-100629917-G-A		not specified	Uncertain significance (Dec 06, 2021)
15-100629924-A-G			Benign (May 16, 2018)
15-100629944-C-T		not specified	Uncertain significance (Jul 06, 2021)
15-100648367-C-G		not specified	Uncertain significance (Jun 03, 2024)
15-100648383-A-G		not specified	Uncertain significance (Nov 08, 2022)
15-100648396-A-G			Benign (May 14, 2018)
15-100648425-T-C		not specified	Uncertain significance (Sep 30, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ASB7	protein_coding	protein_coding	ENST00000332783	3	49172

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.984	0.0161	125632	0	2	125634	0.00000796

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	3.27	64	191	0.334	0.0000119	2074
Missense in Polyphen		13	64.061	0.20293		609
Synonymous	-0.659	82	74.8	1.10	0.00000484	634
Loss of Function	3.59	1	17.0	0.0589	0.00000145	145

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.000145	0.0000653
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Probable substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250, ECO:0000269|PubMed:16325183}.
• Pathway: Post-translational protein modification;Metabolism of proteins;Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation;Neddylation (Consensus)

Recessive Scores

• pRec: 0.113

Intolerance Scores

• rvis_EVS: -0.34
• rvis_percentile_EVS: 30.07

Haploinsufficiency Scores

• pHI: 0.572
• hipred: Y
• hipred_score: 0.728
• ghis: 0.648

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.937

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Asb7

Gene ontology

• Biological process: protein ubiquitination;intracellular signal transduction;post-translational protein modification
• Cellular component: cytosol
• Molecular function: protein binding