ASPDH

aspartate dehydrogenase domain containing

Basic information

Region (hg38): 19:50511600-50514690

Links

ENSG00000204653 ∙ NCBI:554235 ∙ ∙ HGNC:33856 ∙ Uniprot:A6ND91 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ASPDH gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ASPDH gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			29			29
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	29	0	0

Variants in ASPDH

This is a list of pathogenic ClinVar variants found in the ASPDH region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-50511768-A-G		not specified	Uncertain significance (Feb 28, 2025)
19-50512191-C-G		not specified	Uncertain significance (Jan 21, 2025)
19-50512205-C-T		not specified	Uncertain significance (Mar 28, 2023)
19-50512223-C-T		not specified	Uncertain significance (Dec 03, 2021)
19-50512250-G-T		not specified	Uncertain significance (Dec 19, 2023)
19-50512253-C-T		not specified	Uncertain significance (Jul 10, 2024)
19-50512258-A-G		not specified	Uncertain significance (Nov 10, 2021)
19-50512367-C-G		not specified	Uncertain significance (Jan 03, 2024)
19-50512382-C-T		not specified	Uncertain significance (Feb 05, 2025)
19-50512409-G-A		not specified	Uncertain significance (Mar 07, 2023)
19-50512429-G-T		not specified	Uncertain significance (Mar 07, 2025)
19-50512436-T-G		not specified	Uncertain significance (Apr 22, 2022)
19-50512492-A-G		not specified	Uncertain significance (Jul 09, 2021)
19-50512501-G-A		not specified	Uncertain significance (Oct 17, 2023)
19-50512540-C-T		not specified	Uncertain significance (May 04, 2023)
19-50512672-C-T		not specified	Uncertain significance (Feb 06, 2024)
19-50512677-G-T		not specified	Uncertain significance (Dec 22, 2023)
19-50512699-C-T		not specified	Uncertain significance (Jan 20, 2025)
19-50512714-C-T		not specified	Uncertain significance (Jul 27, 2024)
19-50512735-C-T		not specified	Uncertain significance (Feb 07, 2025)
19-50512780-T-G		not specified	Uncertain significance (Aug 21, 2024)
19-50512946-A-G		not specified	Uncertain significance (Feb 28, 2024)
19-50512955-G-T		not specified	Uncertain significance (Mar 01, 2024)
19-50512998-C-G		not specified	Uncertain significance (Apr 28, 2022)
19-50513006-G-C		not specified	Uncertain significance (Dec 18, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ASPDH	protein_coding	protein_coding	ENST00000389208	7	3091

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000135	0.394	125665	0	17	125682	0.0000676

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.452	143	159	0.899	0.0000103	1760
Missense in Polyphen		66	75.87	0.86991		812
Synonymous	0.388	65	69.1	0.941	0.00000481	624
Loss of Function	0.536	10	12.0	0.833	7.53e-7	125

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000162	0.000162
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000464	0.0000462
European (Non-Finnish)	0.0000903	0.0000880
Middle Eastern	0.00	0.00
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate. {ECO:0000250}.
• Pathway: Nicotinate and nicotinamide metabolism - Homo sapiens (human) (Consensus)

Intolerance Scores

• loftool: 0.867
• rvis_EVS: 0.68
• rvis_percentile_EVS: 84.93

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.144
• ghis: 0.396

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.00872

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Aspdh

Gene ontology

• Biological process: NADP catabolic process;NAD biosynthetic process;oxidation-reduction process
• Molecular function: aspartate dehydrogenase activity;NADP binding