BCL7B

BAF chromatin remodeling complex subunit BCL7B, the group of BAF complex

Basic information

Region (hg38): 7:73536355-73557690

Links

ENSG00000106635 ∙ NCBI:9275 ∙ OMIM:605846 ∙ HGNC:1005 ∙ Uniprot:Q9BQE9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the BCL7B gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the BCL7B gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			7			7
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding				1		1
Total	0	0	7	2	0

Variants in BCL7B

This is a list of pathogenic ClinVar variants found in the BCL7B region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-73537310-C-G			Likely benign (Dec 01, 2022)
7-73539906-T-C		not specified	Uncertain significance (Oct 05, 2022)
7-73539926-G-A		not specified	Uncertain significance (Dec 14, 2023)
7-73539944-T-A		not specified	Uncertain significance (Jan 06, 2023)
7-73539974-G-A		not specified	Uncertain significance (Oct 13, 2023)
7-73540029-C-A		not specified	Uncertain significance (May 04, 2023)
7-73543596-A-G		not specified	Uncertain significance (Aug 20, 2023)
7-73553638-A-C			Likely benign (May 01, 2022)
7-73557563-C-G		not specified	Uncertain significance (Mar 27, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
BCL7B	protein_coding	protein_coding	ENST00000223368	6	21647

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.185	0.804	125739	0	9	125748	0.0000358

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.22	77	114	0.678	0.00000649	1303
Missense in Polyphen		25	44.331	0.56394		531
Synonymous	0.00713	49	49.1	0.999	0.00000318	403
Loss of Function	2.21	3	10.9	0.276	5.47e-7	124

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.0000993	0.0000992
East Asian	0.00	0.00
Finnish	0.000231	0.000231
European (Non-Finnish)	0.0000271	0.0000264
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Positive regulator of apoptosis. Plays a role in the Wnt signaling pathway, negatively regulating the expression of Wnt signaling components CTNNB1 and HMGA1 (PubMed:25569233). Involved in cell cycle progression, maintenance of the nuclear structure and stem cell differentiation (PubMed:25569233). May play a role in lung tumor development or progression (By similarity). {ECO:0000250|UniProtKB:Q921K9, ECO:0000269|PubMed:25569233}.

Recessive Scores

• pRec: 0.136

Intolerance Scores

• loftool: 0.340
• rvis_EVS: -0.21
• rvis_percentile_EVS: 38.28

Haploinsufficiency Scores

• pHI: 0.376
• hipred: Y
• hipred_score: 0.591
• ghis: 0.511

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.276

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Low	Low
Primary Immunodeficiency	Medium	Low	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Bcl7b

Gene ontology

• Biological process: apoptotic process;biological_process;Wnt signaling pathway;cell differentiation
• Cellular component: cellular_component
• Molecular function: actin binding;protein binding