BGN
protein-codingbiglycan, the group of Small leucine rich repeat proteoglycans
Gene summary
This gene encodes a member of the small leucine-rich proteoglycan (SLRP) family of proteins. The encoded preproprotein is proteolytically processed to generate the mature protein, which plays a role in bone growth, muscle development and regeneration, and collagen fibril assembly in multiple tissues. This protein may also regulate inflammation and innate immunity. Additionally, the encoded protein may contribute to atherosclerosis and aortic valve stenosis in human patients. This gene and the related gene decorin are thought to be the result of a gene duplication. [provided by RefSeq, Nov 2015]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~14.6 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: XL
Disease ID:MONDO:0010515
Submitter: Ambry Genetics
Inheritance Pattern: XL
Disease ID:MONDO:0010515
Submitter: Ambry Genetics
Inheritance Pattern: XL
Disease ID:MONDO:0010248
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: XL
Disease ID:MONDO:0010515
Submitter: ClinGen
Variants in *BGN* have been reported in individuals with X-linked Meester-Loeys syndrome (MLS), X-linked familial thoracic aortic aneurysm and dissection (TAAD), and X-linked spondyloepimetaphyseal dysplasia (SEMDX). Given differences in molecular mechanism and phenotypes between TAAD/MLS and SEMDX, a split curation for SEMDX will be curated separately by the Skeletal Disorders GCEP in the future. Missense variants not affecting splicing have mainly been associated with SEMDX, whereas loss-of-function variants have been associated with TAAD/MLS. This current curation will be for the lumped disease entity of *BGN*-related syndromic thoracic aortic aneurysm and dissection. *BGN* was first reported in relation to aortic disease in mice in 2007 (PMID: 17502576) and in humans with X-linked syndromic thoracic aortic aneurysms and dissections in 2017 (PMID: 27632686). Evidence supporting this gene-disease relationship includes case-level data and experimental data. Eight variants reported in eight probands from two publications are included in this curation (PMIDs: 27632686, 38531898). Variants included nonsense, frameshift, deletions, and splicing variants. More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) has been reached. In humans, Meester *et al.* (2017) described five families with loss-of-function variants in *BGN* who had an X-linked severe syndromic form of thoracic aortic aneurysms and dissections, including features such as joint hypermobility, hypertelorism, malar hypoplasia, joint contractures, and reduced bone density (PMID: 27632686). Two male probands with very early onset aortic disease and mild skeletal dysplasia had *BGN* deletions spanning exons 2-8 that extended into the 5’ untranslated region of the *ATP2B3* gene, resulting in use of the *BGN* 5’-UTR to drive *ATP2B3* expression in skin fibroblasts (PMID: 38531898). *ATP2B3* has been associated with X-linked cerebellar ataxia and is not expressed in control skin fibroblasts. These two probands were not scored for this curation due to extragenic involvement. In 2024, Meester *et al.* described an additional 13 probands and their relatives, and showed that *BGN* variants have reduced penetrance and variable expressivity. Some individuals had only subtle syndromic features or presented with aortic disease as late as 70 years old (PMID: 38531898). In addition to previous features described, some individuals also had peripheral or cerebral arterial aneurysms or dissections. In line with X-linked inheritance, disease was more penetrant in hemizygous males compared to heterozygous females. This study also showed loss of biglycan protein expression on western blot from skin fibroblasts of multiple individuals with the described *BGN* variants. The mechanism of pathogenicity appears to be loss-of-function, although one missense variant of uncertain significance was reported in a family with arterial aneurysms, joint hypermobility, and musculoskeletal injuries/pain (PMID: 41465473). This gene-disease relationship is also supported by animal models and expression studies. Using immunohistochemistry and immunoelectron microscopy, Heegaard *et al.* (2007) showed that biglycan is detected in the aortic walls of wildtype mice, with the adventitia being the major site of biglycan deposition (PMID: 17502576). In *BGN*-knockout male mice, necrocopies following sudden death revealed major hemorrhage in the thoracic (82%) or abdominal (18%) cavity. Histology showed aortic rupture involving intimal and medial tears and dissection between media and adventitia (PMID: 17502576). In another study in *BGN*-knockout mice, radiographic, microradiographic, and histological analyses showed that the epiphyseal and metaphyseal trabecular structures in the femora, tibiae, and vertebrae of 6 month old mice were thinner, fewer, and poorly connected to each other compared to wild type. In addition, bone volume/total tissue volume was reduced to below 50% of wildtype. Total ash weight (mineral content) was also reduced in mutant long bones. These findings supported that disruption of *BGN* leads to an osteoporosis-like phenotype in mice (PMID: 9731537). Additionally, stained aortic tissue from two individuals with loss-of-function *BGN* variants showed increased phosphorylated SMAD2 positive nuclei (a specific marker of activated canonical TGF-β signaling) compared to controls, and was similar to aortic tissue from a proband with Loeys-Dietz syndrome (PMID: 27632686). Increased pSMAD2 and TGF-β signaling has also been observed in aortic tissue affected by thoracic aortic aneurysm and dissection, Marfan syndrome, and Loeys-Dietz syndrome (PMIDs: 18852674, 21493862, 29682117, 30037098). This gene-disease pair was originally evaluated by the Heritable Thoracic Aortic Aneurysm and Dissection Gene Curation Expert Panel on December 22, 2016. It was reevaluated on February 6, 2026. As a result of this reevaluation, the classification changed from Limited to Strong with the addition of new case-level and experimental evidence as described above. In summary, there is strong evidence supporting the relationship between *BGN* and X-linked syndromic thoracic aortic aneurysm. This classification was approved by the ClinGen Heritable Thoracic Aortic Aneurysm and Dissection subgroup of the Hereditary Cardiovascular Gene Curation Expert Panel on the meeting date February 6, 2026 (SOP Version 11).
Inheritance Pattern: XL
Disease ID:MONDO:0010248
Submitter: Ambry Genetics
Inheritance Pattern: XL
Disease ID:MONDO:0010515
Submitter: Genomics England PanelApp
Inheritance Pattern: XL
Disease ID:MONDO:0010515
Submitter: Illumina
Inheritance Pattern: XL
Disease ID:MONDO:0010515
Submitter: G2P
Inheritance Pattern: Unknown
Disease ID:MONDO:0019625
Submitter: ClinGen
Inheritance Pattern: XL
Disease ID:MONDO:0010248
Submitter: Ambry Genetics
Inheritance Pattern: XL
Disease ID:MONDO:0010248
Submitter: Orphanet
Inheritance Pattern: XL
Disease ID:MONDO:0010248
Submitter: G2P
Clinical Genomic Database (CGD)
Manifestation: Cardiovascular; Craniofacial; Musculoskeletal; Neurologic
Intervention: Cardiovascular
Rationale: Among other features, the condition can include early-onset aortic aneurysm, and awareness may allow erly diagnosis and management
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to BGN variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_001711.6. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 6 | 105 | 1 | 112 | ||
| missense | 1 | 4 | 239 | 24 | 268 | |
| nonsense | 5 | 3 | 8 | |||
| start loss | 0 | |||||
| frameshift | 2 | 6 | 3 | 11 | ||
| splice donor/acceptor (+/-2bp) | 6 | 9 | 15 | |||
| Total | 3 | 21 | 260 | 129 | 1 | 414 |
Highest pathogenic variant AF is 0.000012455433
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_001702.1 | 7 | MANE Select | |
| Ensembl | ENSP00000327336.4 | 7 | MANE Select | |
| Ensembl | ENSP00000402525.1 | 4 | Standard | |
| Ensembl | ENSP00000529782.1 | 7 | Standard |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Metabolism of carbohydrates
- A tetrasaccharide linker sequence is required for GAG synthesis
- Heparan sulfate/heparin (HS-GAG) metabolism
- Chondroitin sulfate biosynthesis
- Dermatan sulfate biosynthesis
Biological Process
- blood vessel remodeling
- biological_process
- peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
- extracellular matrix organization
- chondroitin sulfate biosynthetic process
Molecular Function
- extracellular matrix structural constituent
- glycosaminoglycan binding
- extracellular matrix structural constituent conferring compression resistance
- extracellular matrix binding
Cellular Component
- extracellular region
- Golgi lumen
- cell surface
- transport vesicle
- extracellular matrix
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000331595
- Coding exons
- 7
- Length
- 14616
- Individuals with no LoFs
- 125732
- Homozygous LoFs
- 3
- Heterozygous LoFs
- 2
- Defined
- 125737
- p
- 0.0000199
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 0.714 | 141 | 167 | 0.845 | 0.0000146 | 2421 |
| Missense (PolyPhen) | 44 | 68.622 | 0.64119 | 1070 | ||
| Synonymous | -0.826 | 82 | 73.0 | 1.12 | 0.00000649 | 742 |
| Loss of Function | 2.32 | 2 | 9.88 | 0.202 | 7.05e-7 | 167 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0 | 0.0 | absent |
| Latino/Admixed American | 0 | 0.0 | absent |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0 | 0.0 | absent |
| Finnish | 0.00012 | 0.000092 | rare |
| European (Non-Finnish) | 0.000037 | 0.000026 | rare |
| South Asian | 0 | 0.0 | absent |
| Other | 0 | 0.0 | absent |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: May be involved in collagen fiber assembly. {ECO:0000250}.;
- Disease
- DISEASE: Meester-Loeys syndrome (MRLS) [MIM:300989]: An X-linked, thoracic aortic aneurysm syndrome characterized by early-onset, severe aortic aneurysm and dissection. Other recurrent findings include hypertelorism, pectus deformity, joint hypermobility, contractures, and mild skeletal dysplasia. {ECO:0000269|PubMed:27632686}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Spondyloepimetaphyseal dysplasia, X-linked (SEMDX) [MIM:300106]: A X-linked recessive bone disease characterized by severe short-trunk dwarfism, brachydactyly, metaphyseal flaring of lower extremities, short and broad long bone diaphyses, moderate platyspondyly, normal facies, and normal intelligence. {ECO:0000269|PubMed:27236923}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.117
Intolerance Scores
- LoFtool
- 0.0632
- RVIS EVS
- -0.16
- RVIS percentile EVS
- 41.91
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.801
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |