BLVRA

protein-coding

biliverdin reductase A

Gene summary

The protein encoded by this gene belongs to the biliverdin reductase family, members of which catalyze the conversion of biliverdin to bilirubin in the presence of NADPH or NADH. Mutations in this gene are associated with hyperbiliverdinemia. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Dec 2011]

Previous symbols:
  • BLVR

MANE transcript

NM_000712.4

Inheritance

AD, AR

ClinVar variants

P:4U:49B:19

Top phenotype

Hyperbiliverdinemia

gnomAD constraint

pLI —, LoF o/e 0.51

Max pathogenic AF

—

Genomic locus

chr7:43,758,680-43,807,342

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~48.7 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

hyperbiliverdinemiaSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0013595

Submitter: Orphanet

hyperbiliverdinemiaLIMITED

Inheritance Pattern: Unknown

Disease ID:MONDO:0013595

Submitter: Labcorp Genetics (formerly Invitae)

hyperbiliverdinemiaMODERATE

Inheritance Pattern: AD

Disease ID:MONDO:0013595

Submitter: PanelApp Australia

hyperbiliverdinemiaLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0013595

Submitter: Ambry Genetics

hyperbiliverdinemiaMODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0013595

Submitter: ClinGen

*BLVRA* enocdes Biliverdin reductase A (BVR-A) and was first reported in relation to hyperbiliverdemia by Gafvels et al. (2009). Abnormality of heme degradation pathway, especially of the enzyme biliverdin reductase responsible for the conversion of biliverdin to bilirubin, leads to the appearance of hyperbiliverdinemia. The accumulation of biliverdin in the plasma appears with greenish coloration of the skin, urine, or tissues. Apart from enzyme defects, hyperbiliverdinemia may also be caused by liver dysfunction or decompensated liver cirrhosis, through hepatocellular damage, thereby impairing the processing and excretion of bilirubin into the blood and contributing to elevated biliverdin levels. Homozygous mutations in the BLVRA gene cause this disease. **Summary of Case Level Data (4.5 points):** 2 probands were scored with 1 nonsense variant (PMID: 21278388). **Summary of Experimental Evidence (4.5 points):** Human biliverdin IXalpha reductase (BVR) was cloned, sequenced, and characterized, revealing its dual pH and cofactor dependence, Zn metalloprotein nature, and similarity to rat BVR, with distinct differences in cofactor use and charge variants (PMID: 8631357). Bilirubin, a heme catabolism by-product antioxidant, reduced oxidative stress in vivo, as indicated by markers of oxidative stress were increased in Bvra–/– mice with low bilirubin levels. The study generated and characterized Bvra–/– mice, lacking biliverdin reductase-a, which caused plasma biliverdin to be elevated while plasma bilirubin was nearly undetectable and bile was green, mimicking "green jaundice". Such mice exhibited higher oxidative stress, marked by increased plasma CE-OOH and oxidized erythrocyte Prx2, indicating the physiological antioxidant role of bilirubin (PMID: 29195835). The accumulation of bile acids in cholestasis, leading to oxidative stress, was further linked to BVRα deficiency, which causes green jaundice; however, biliverdin (BV) still provides antioxidant protection independent of BVRα, without significantly affecting oxidative stress or cell death in the presence of deoxycholic acid (PMID: 27387768). In summary, experimental and clinical evidence supports a moderate gene- disease relationship between *BLVRA* and autosomal recessive Hyperbiliverdinemia. While more evidence is required to meet a definitive classification, no contradictory evidence has been identified. This classification was approved by the ClinGen IEM GCEP on January 10, 2025 (SOP Version 11).

Clinical Genomic Database (CGD)

HyperbiliverdinemiaAD/AR

Manifestation: Gastrointestinal

Intervention: General

Rationale: Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing

Comments: Appropriate hepatic-related care may be beneficial, but the advantage of genetic diagnosis is unclear; Individuals with heterozygous variants have been reported as manifesting with clinical signs in the context of (apparently unrelated) liver dysfunction

Refs: 19580635; 19699374; 21278388Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to BLVRA variants in ClinVar

4 Conditions Cataloged
not providedTotal: 47
not specifiedTotal: 33
HyperbiliverdinemiaTotal: 7
BLVRA-related disorderTotal: 2

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_000712.4. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
7
clinvar
3
clinvar
11
missense
45
clinvar
5
clinvar
4
clinvar
54
nonsense
2
clinvar
2
clinvar
4
start loss
0
frameshift
0
splice donor/acceptor (+/-2bp)
3
clinvar
3
Total224912772

Highest pathogenic variant AF is 0.000037801794

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 38 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_000712.4RefSeqNP_000703.27MANE Select
ENST00000265523.9EnsemblENSP00000265523.47MANE Select
NM_001253823.2RefSeqNP_001240752.17Standard
ENST00000402924.5EnsemblENSP00000385757.17Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Porphyrin and chlorophyll metabolism - Homo sapiens (human)
  • Hereditary Coproporphyria (HCP)
  • Porphyria Variegata (PV)
  • Congenital Erythropoietic Porphyria (CEP) or Gunther Disease
  • Acute Intermittent Porphyria

Biological Process

  • heme catabolic process
  • oxidation-reduction process

Molecular Function

  • biliverdin reductase activity
  • protein binding
  • zinc ion binding

Cellular Component

  • cytosol
  • extracellular exosome

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000402924
Coding exons
7
Length
48661
Individuals with no LoFs
125697
Homozygous LoFs
0
Heterozygous LoFs
50
Defined
125747
p
0.000199
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.3461471590.9230.000009291925
Missense (PolyPhen)5262.4490.83268726
Synonymous1.345366.90.7920.00000418569
Loss of Function1.79815.70.5119.42e-7174

Population LoF Frequency

PopulationCAFp-valueStatus
African00.0absent
Latino/Admixed American0.0000870.000087rare
Ashkenazi Jewish0.0000990.000099rare
East Asian0.0000540.000054rare
Finnish0.000970.00097rare
European (Non-Finnish)0.000200.00020rare
South Asian0.0000330.000033rare
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Reduces the gamma-methene bridge of the open tetrapyrrole, biliverdin IX alpha, to bilirubin with the concomitant oxidation of a NADH or NADPH cofactor.;

Recessive Scores

pRec
0.127

Intolerance Scores

LoFtool
0.632
RVIS EVS
0.06
RVIS percentile EVS
58.74

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.701

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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