BOLA1

bolA family member 1

Basic information

Region (hg38): 1:149887890-149900798

Links

ENSG00000178096 ∙ NCBI:51027 ∙ OMIM:613181 ∙ HGNC:24263 ∙ Uniprot:Q9Y3E2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the BOLA1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the BOLA1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			15			15
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	15	0	0

Variants in BOLA1

This is a list of pathogenic ClinVar variants found in the BOLA1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-149900073-G-T		not specified	Uncertain significance (Dec 04, 2024)
1-149900098-G-C		not specified	Uncertain significance (Jan 29, 2024)
1-149900136-C-G		not specified	Uncertain significance (Apr 15, 2022)
1-149900151-C-T		not specified	Uncertain significance (Mar 08, 2024)
1-149900193-G-T		not specified	Uncertain significance (Apr 23, 2024)
1-149900195-C-T		not specified	Uncertain significance (Mar 31, 2023)
1-149900254-G-T		not specified	Uncertain significance (Mar 31, 2024)
1-149900265-G-T		not specified	Uncertain significance (Oct 11, 2024)
1-149900273-G-C		not specified	Uncertain significance (Jul 14, 2024)
1-149900294-G-A		not specified	Uncertain significance (Mar 01, 2025)
1-149900295-G-T		not specified	Uncertain significance (Sep 03, 2024)
1-149900307-T-A		not specified	Uncertain significance (Dec 04, 2024)
1-149900317-C-G		not specified	Uncertain significance (May 06, 2024)
1-149900355-G-T		not specified	Uncertain significance (Jun 06, 2023)
1-149900367-C-T		not specified	Uncertain significance (Feb 01, 2025)
1-149900381-G-A		not specified	Uncertain significance (Jan 29, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
BOLA1	protein_coding	protein_coding	ENST00000369153	1	12912

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0382	0.657	125544	0	7	125551	0.0000279

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.512	83	97.2	0.854	0.00000655	852
Missense in Polyphen		32	32.758	0.97685		315
Synonymous	0.966	38	46.4	0.820	0.00000331	329
Loss of Function	0.425	2	2.76	0.724	1.90e-7	23

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000624	0.0000616
Ashkenazi Jewish	0.00	0.00
East Asian	0.000110	0.000109
Finnish	0.00	0.00
European (Non-Finnish)	0.0000271	0.0000264
Middle Eastern	0.000110	0.000109
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Acts as a mitochondrial iron-sulfur (Fe-S) cluster assembly factor that facilitates (Fe-S) cluster insertion into a subset of mitochondrial proteins (By similarity). Probably acts together with the monothiol glutaredoxin GLRX5 (PubMed:27532772). May protect cells against oxidative stress (PubMed:22746225). {ECO:0000250|UniProtKB:Q3E793, ECO:0000269|PubMed:22746225, ECO:0000305|PubMed:27532772}.

Recessive Scores

• pRec: 0.105

Intolerance Scores

• loftool: 0.323
• rvis_EVS: 0.46
• rvis_percentile_EVS: 78.28

Haploinsufficiency Scores

• pHI: 0.0973
• hipred: N
• hipred_score: 0.278
• ghis: 0.517

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.992

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Bola1

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: mitochondrion
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;protein binding