BTBD6

BTB domain containing 6, the group of BTB domain containing

Basic information

Region (hg38): 14:105248533-105251093

Links

ENSG00000184887 ∙ NCBI:90135 ∙ ∙ HGNC:19897 ∙ Uniprot:Q96KE9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the BTBD6 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the BTBD6 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				3	1	4
missense			42	2		44
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	42	5	1

Variants in BTBD6

This is a list of pathogenic ClinVar variants found in the BTBD6 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
14-105248877-G-A		not specified	Uncertain significance (Jan 23, 2024)
14-105248890-C-G		not specified	Uncertain significance (Sep 29, 2023)
14-105248898-A-G		not specified	Uncertain significance (Sep 27, 2021)
14-105248977-G-A		not specified	Uncertain significance (Feb 06, 2025)
14-105248982-C-T		not specified	Uncertain significance (Jun 09, 2022)
14-105248995-C-T		not specified	Uncertain significance (Dec 28, 2024)
14-105249004-C-T		not specified	Uncertain significance (Jan 22, 2025)
14-105249006-G-C		not specified	Uncertain significance (Mar 07, 2024)
14-105249024-C-T		not specified	Uncertain significance (Dec 06, 2021)
14-105249033-A-G		not specified	Uncertain significance (Jan 17, 2025)
14-105249039-C-G		not specified	Uncertain significance (Mar 06, 2025)
14-105249046-G-A		not specified	Uncertain significance (Mar 25, 2024)
14-105249178-C-G		not specified	Uncertain significance (Dec 11, 2024)
14-105249188-G-A		not specified	Uncertain significance (Sep 04, 2024)
14-105249212-C-T		not specified	Uncertain significance (Feb 04, 2025)
14-105249216-C-T		not specified	Likely benign (Dec 07, 2024)
14-105249221-G-A		not specified	Uncertain significance (Jul 20, 2022)
14-105249375-G-A		not specified	Uncertain significance (Dec 10, 2024)
14-105249441-C-T		not specified	Uncertain significance (Jan 31, 2023)
14-105249456-G-A		not specified	Uncertain significance (Dec 15, 2024)
14-105249650-A-C		not specified	Uncertain significance (Nov 09, 2021)
14-105249673-C-G			Likely benign (Feb 01, 2025)
14-105249738-G-A		not specified	Uncertain significance (Jul 25, 2023)
14-105249830-C-T		not specified	Uncertain significance (Dec 17, 2024)
14-105249849-A-G		not specified	Uncertain significance (Aug 28, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
BTBD6	protein_coding	protein_coding	ENST00000392554	4	2604

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000371	0.825	125676	0	67	125743	0.000266

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.822	223	260	0.857	0.0000168	3120
Missense in Polyphen		82	102.96	0.79646		1245
Synonymous	-2.27	150	119	1.27	0.00000871	1005
Loss of Function	1.37	11	17.1	0.642	0.00000110	179

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000297	0.000297
Ashkenazi Jewish	0.000698	0.000695
East Asian	0.000926	0.000925
Finnish	0.00	0.00
European (Non-Finnish)	0.000274	0.000273
Middle Eastern	0.000926	0.000925
South Asian	0.0000653	0.0000653
Other	0.000328	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Adapter protein for the cul3 E3 ubiquitin-protein ligase complex (By similarity). Involved in late neuronal development and muscle formation (By similarity). {ECO:0000250|UniProtKB:A9JRD8, ECO:0000250|UniProtKB:Q2LE78}.
• Pathway: Post-translational protein modification;Metabolism of proteins;Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation;Neddylation (Consensus)

Recessive Scores

• pRec: 0.110

Intolerance Scores

• loftool: 0.584
• rvis_EVS: -0.89
• rvis_percentile_EVS: 10.37

Haploinsufficiency Scores

• pHI: 0.159
• hipred: N
• hipred_score: 0.248
• ghis: 0.505

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0866

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Btbd6

Zebrafish Information Network

• Gene name: btbd6a
• Affected structure: primary neuron
• Phenotype tag: abnormal
• Phenotype quality: decreased amount

Gene ontology

• Biological process: neurogenesis;post-translational protein modification
• Cellular component: cytosol