CA14

carbonic anhydrase 14, the group of Carbonic anhydrases

Basic information

Region (hg38): 1:150257251-150265078

Links

ENSG00000118298 ∙ NCBI:23632 ∙ OMIM:604832 ∙ HGNC:1372 ∙ Uniprot:Q9ULX7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CA14 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CA14 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			19	2	1	22
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region				1		1
non coding						0
Total	0	0	19	2	2

Variants in CA14

This is a list of pathogenic ClinVar variants found in the CA14 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-150260157-A-C		not specified	Uncertain significance (Nov 10, 2022)
1-150261527-G-A		not specified	Likely benign (Jun 16, 2023)
1-150261627-A-G		not specified	Uncertain significance (Jan 24, 2023)
1-150262203-G-A		not specified	Uncertain significance (Feb 28, 2023)
1-150262206-A-C		not specified	Uncertain significance (Jun 28, 2023)
1-150262239-G-T		not specified	Uncertain significance (Apr 07, 2022)
1-150262546-T-C		not specified	Uncertain significance (Sep 29, 2023)
1-150262572-G-A			Benign (Jun 14, 2018)
1-150262598-C-G		not specified	Uncertain significance (Dec 13, 2021)
1-150262604-T-C		not specified	Uncertain significance (Oct 12, 2022)
1-150262826-C-T		not specified	Uncertain significance (Nov 10, 2023)
1-150262837-A-C		not specified	Uncertain significance (May 27, 2022)
1-150263111-G-A		not specified	Uncertain significance (Dec 20, 2022)
1-150263194-G-C		not specified	Uncertain significance (Aug 17, 2022)
1-150263393-G-A		not specified	Uncertain significance (Jan 29, 2024)
1-150263396-T-C		not specified	Likely benign (Feb 03, 2022)
1-150263790-C-T			Likely benign (Jun 23, 2018)
1-150263806-G-C		not specified	Uncertain significance (Jul 07, 2022)
1-150263814-G-A		not specified	Uncertain significance (Feb 05, 2024)
1-150263864-T-G		not specified	Uncertain significance (May 03, 2023)
1-150263865-G-A			Benign (Jan 05, 2018)
1-150263869-G-A		not specified	Uncertain significance (Jun 28, 2023)
1-150264613-G-A		not specified	Uncertain significance (Feb 16, 2023)
1-150264618-A-T		not specified	Uncertain significance (Jun 16, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
CA14	protein_coding	protein_coding	ENST00000369111	11	7925

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
5.92e-16	0.00741	125608	1	138	125747	0.000553

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.240	172	181	0.950	0.00000894	2167
Missense in Polyphen		70	66.55	1.0518		766
Synonymous	0.314	69	72.4	0.953	0.00000376	662
Loss of Function	-0.132	23	22.3	1.03	0.00000112	239

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000475	0.000475
Ashkenazi Jewish	0.00	0.00
East Asian	0.000707	0.000707
Finnish	0.000185	0.000185
European (Non-Finnish)	0.000661	0.000659
Middle Eastern	0.000707	0.000707
South Asian	0.00105	0.00101
Other	0.000490	0.000489

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Reversible hydration of carbon dioxide.
• Pathway: Nitrogen metabolism - Homo sapiens (human);Metabolism;Reversible hydration of carbon dioxide (Consensus)

Recessive Scores

• pRec: 0.0950

Intolerance Scores

• loftool: 0.857
• rvis_EVS: -0.6
• rvis_percentile_EVS: 17.75

Haploinsufficiency Scores

• pHI: 0.195
• hipred: N
• hipred_score: 0.167
• ghis: 0.433

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.564

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Car14
• Phenotype: reproductive system phenotype; mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); normal phenotype; homeostasis/metabolism phenotype; growth/size/body region phenotype

Gene ontology

• Biological process: bicarbonate transport
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: carbonate dehydratase activity;zinc ion binding