CA7

carbonic anhydrase 7, the group of Carbonic anhydrases

Basic information

Region (hg38): 16:66844414-66854153

Links

ENSG00000168748 ∙ NCBI:766 ∙ OMIM:114770 ∙ HGNC:1381 ∙ Uniprot:P43166 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CA7 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CA7 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1	1	2
missense			11	1		12
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	11	2	1

Variants in CA7

This is a list of pathogenic ClinVar variants found in the CA7 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
16-66844515-G-A		not specified	Uncertain significance (Aug 10, 2023)
16-66847054-A-T			Likely benign (May 07, 2018)
16-66847140-C-T		not specified	Uncertain significance (Dec 31, 2024)
16-66847187-C-T			Benign (Jul 12, 2018)
16-66847206-A-G		not specified	Uncertain significance (Apr 09, 2024)
16-66850555-C-A		not specified	Uncertain significance (Nov 29, 2023)
16-66850561-G-A		not specified	Uncertain significance (Feb 11, 2022)
16-66850612-G-A		not specified	Uncertain significance (Nov 17, 2023)
16-66850631-C-T		not specified	Uncertain significance (Feb 16, 2023)
16-66851549-T-C			Likely benign (Feb 08, 2018)
16-66851706-C-T		not specified	Uncertain significance (Dec 16, 2021)
16-66852766-C-T		not specified	Uncertain significance (Apr 08, 2024)
16-66852770-A-G		not specified	Uncertain significance (May 24, 2023)
16-66852782-A-T		not specified	Uncertain significance (Jan 18, 2025)
16-66853470-G-A		not specified	Uncertain significance (May 18, 2022)
16-66853491-G-A		not specified	Uncertain significance (Dec 02, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
CA7	protein_coding	protein_coding	ENST00000338437	7	9775

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.108	0.886	125741	0	7	125748	0.0000278

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.27	83	165	0.502	0.0000101	1743
Missense in Polyphen		22	72.468	0.30358		777
Synonymous	-0.250	68	65.4	1.04	0.00000410	512
Loss of Function	2.41	4	13.6	0.295	6.66e-7	148

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000290	0.0000290
Ashkenazi Jewish	0.00	0.00
East Asian	0.000109	0.000109
Finnish	0.00	0.00
European (Non-Finnish)	0.0000176	0.0000176
Middle Eastern	0.000109	0.000109
South Asian	0.0000653	0.0000653
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Reversible hydration of carbon dioxide.
• Pathway: Nitrogen metabolism - Homo sapiens (human);Metabolism;Reversible hydration of carbon dioxide (Consensus)

Recessive Scores

• pRec: 0.130

Intolerance Scores

• loftool: 0.0836
• rvis_EVS: -0.05
• rvis_percentile_EVS: 49.76

Haploinsufficiency Scores

• pHI: 0.336
• hipred: Y
• hipred_score: 0.837
• ghis: 0.541

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.845

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Low	Medium
Primary Immunodeficiency	Medium	Low	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Car7
• Phenotype: growth/size/body region phenotype; adipose tissue phenotype (the observable morphological and physiological characteristics of mammalian fat tissue that are manifested through development and lifespan); homeostasis/metabolism phenotype; behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); skeleton phenotype; nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan)

Gene ontology

• Biological process: bicarbonate transport;positive regulation of synaptic transmission, GABAergic;positive regulation of cellular pH reduction;regulation of chloride transport
• Cellular component: cytosol
• Molecular function: carbonate dehydratase activity;zinc ion binding