CADM3-AS1

CADM3 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 1:159170320-159211455

Links

ENSG00000225670 ∙ NCBI:100131825 ∙ ∙ HGNC:40812 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CADM3-AS1 gene.

• Inborn genetic diseases (15 variants)
• Charcot-Marie-Tooth disease, axonal, type 2FF (2 variants)
• DUFFY BLOOD GROUP SYSTEM, FY(a-b-) PHENOTYPE (2 variants)
• Duffy Blood group system (1 variants)
• not specified (1 variants)
• DUFFY BLOOD GROUP SYSTEM, FYA/FYB POLYMORPHISM (1 variants)
• not provided (1 variants)
• DUFFY BLOOD GROUP SYSTEM, FY(bwk) PHENOTYPE (1 variants)
• Resistance to Plasmodium vivax infection (1 variants)
• White blood cell count quantitative trait locus 1 (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CADM3-AS1 gene is commonly pathogenic or not. These statistics are base on transcript: . Only rare variants are included in the table.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Effect	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
splice donor/acceptor (+/-2bp)			1			1
Total	0	0	1	0	0

Highest pathogenic variant AF is 0.00993286

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP