CASTOR3P

CASTOR family member 3, pseudogene

Basic information

Region (hg38): 7:100222597-100271983

Previous symbols: [ "GATS", "CASTOR3" ]

Links

ENSG00000239521 ∙ NCBI:352954 ∙ ∙ HGNC:29954 ∙ Uniprot:Q8NAP1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CASTOR3P gene.

• Inborn genetic diseases (7 variants)
• not provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CASTOR3P gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)			1			1
splice region						0
non coding			6	1		7
Total	0	0	7	1	0

Variants in CASTOR3P

This is a list of pathogenic ClinVar variants found in the CASTOR3P region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-100223644-T-C		not specified	Uncertain significance (Dec 13, 2022)
7-100223698-C-T		not specified	Uncertain significance (May 05, 2023)
7-100223901-T-C		not specified	Uncertain significance (Dec 03, 2021)
7-100223919-A-G		not specified	Uncertain significance (Jan 29, 2024)
7-100223980-T-C		not specified	Uncertain significance (Sep 01, 2021)
7-100224007-C-T		not specified	Uncertain significance (Aug 02, 2022)
7-100224044-C-T			Likely benign (Jul 01, 2022)
7-100224045-G-A		not specified	Uncertain significance (Jun 29, 2023)
7-100271890-G-T		not specified	Uncertain significance (Dec 21, 2022)
7-100271937-G-A		not specified	Uncertain significance (Oct 14, 2023)
7-100271977-A-C		not specified	Uncertain significance (Feb 28, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

• Pathway: Gastric Cancer Network 1 (Consensus)

Intolerance Scores

• rvis_EVS: -0.25
• rvis_percentile_EVS: 35.42

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.139