CCDST

cervical cancer associated DHX9 suppressive transcript, the group of Long non-coding RNAs with non-systematic symbols

Basic information

Region (hg38): 1:152165553-152445456

Previous symbols: [ "LINC02962" ]

Links

ENSG00000236427 ∙ NCBI:112268240 ∙ ∙ HGNC:55988 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CCDST gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CCDST gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in CCDST

This is a list of pathogenic ClinVar variants found in the CCDST region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-152213255-A-T		EBV-positive nodal T- and NK-cell lymphoma	Likely benign (-)
1-152213496-A-T			Likely benign (Nov 01, 2024)
1-152213508-G-A			Likely benign (Nov 01, 2024)
1-152213599-C-G			Benign (Mar 01, 2022)
1-152213634-G-A			Likely benign (Nov 01, 2024)
1-152214009-C-T			Likely benign (Nov 01, 2023)
1-152214030-G-T			Likely benign (Mar 01, 2023)
1-152214345-A-G			Likely benign (Jul 01, 2023)
1-152214519-G-A			Likely benign (Sep 01, 2022)
1-152214627-G-T			Likely benign (Nov 01, 2022)
1-152214816-A-G			Likely benign (Oct 01, 2024)
1-152215074-G-A			Likely benign (Oct 01, 2024)
1-152215077-G-A			Likely benign (Sep 01, 2022)
1-152215356-A-G			Likely benign (Oct 01, 2022)
1-152215365-G-T			Likely benign (Dec 01, 2022)
1-152215572-A-G			Likely benign (Dec 01, 2022)
1-152216469-G-A			Likely benign (Oct 01, 2024)
1-152216484-G-A			Likely benign (Oct 01, 2024)
1-152218176-A-G			Likely benign (Aug 01, 2023)
1-152218397-G-A			Likely benign (Aug 01, 2023)
1-152218471-C-T			Likely benign (Nov 01, 2022)
1-152218588-T-C		Epidermolysis bullosa simplex with nail dystrophy	Uncertain significance (Oct 01, 2022)
1-152218606-C-G			Likely benign (Jan 01, 2023)
1-152218749-G-A			Likely benign (Jan 01, 2023)
1-152218836-G-T			Likely benign (Oct 01, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP