CCNG2

cyclin G2, the group of Cyclins

Basic information

Region (hg38): 4:77157207-77433388

Links

ENSG00000138764 ∙ NCBI:901 ∙ OMIM:603203 ∙ HGNC:1593 ∙ Uniprot:Q16589 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CCNG2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CCNG2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					3	3
missense			13		1	14
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	13	0	4

Variants in CCNG2

This is a list of pathogenic ClinVar variants found in the CCNG2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
4-77158566-C-G		not specified	Uncertain significance (Nov 17, 2023)
4-77158568-T-A		not specified	Uncertain significance (Dec 14, 2023)
4-77158583-T-C			Benign (Aug 16, 2018)
4-77158584-C-A		not specified	Uncertain significance (Apr 13, 2022)
4-77158615-A-G			Benign (Apr 04, 2018)
4-77159485-G-C		not specified	Uncertain significance (May 09, 2022)
4-77160839-A-G		not specified	Uncertain significance (Feb 07, 2023)
4-77160852-T-C			Benign (Aug 16, 2018)
4-77160943-A-G		not specified	Uncertain significance (Mar 01, 2023)
4-77160944-C-G		not specified	Uncertain significance (Mar 28, 2023)
4-77161495-C-A		not specified	Uncertain significance (Sep 13, 2023)
4-77161668-G-C		not specified	Uncertain significance (Feb 05, 2024)
4-77161721-C-G		not specified	Uncertain significance (Feb 07, 2023)
4-77164274-A-G		not specified	Likely benign (Jun 25, 2024)
4-77164319-T-C		not specified	Uncertain significance (Jan 10, 2023)
4-77164323-T-C		not specified	Uncertain significance (Jan 26, 2023)
4-77164408-C-T			Benign (Oct 10, 2018)
4-77165821-T-A		not specified	Uncertain significance (Nov 22, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
CCNG2	protein_coding	protein_coding	ENST00000316355	7	276239

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00969	0.981	125728	0	20	125748	0.0000795

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.669	147	172	0.856	0.00000813	2260
Missense in Polyphen		20	38.152	0.52422		514
Synonymous	-0.588	69	63.1	1.09	0.00000296	629
Loss of Function	2.26	6	15.7	0.383	7.42e-7	220

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000490	0.000486
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.000140	0.000139
European (Non-Finnish)	0.0000530	0.0000527
Middle Eastern	0.00	0.00
South Asian	0.0000427	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May play a role in growth regulation and in negative regulation of cell cycle progression.
• Pathway: p53 signaling pathway - Homo sapiens (human);FoxO signaling pathway - Homo sapiens (human);G1 to S cell cycle control;DNA Damage Response (only ATM dependent) (Consensus)

Recessive Scores

• pRec: 0.149

Intolerance Scores

• loftool: 0.606
• rvis_EVS: 0.24
• rvis_percentile_EVS: 69.21

Haploinsufficiency Scores

• pHI: 0.333
• hipred: Y
• hipred_score: 0.825
• ghis: 0.512

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.805

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ccng2

Gene ontology

• Biological process: regulation of cyclin-dependent protein serine/threonine kinase activity;mitotic cell cycle;protein phosphorylation;regulation of mitotic nuclear division;positive regulation of cell population proliferation;positive regulation of cell cycle;cell division
• Cellular component: cyclin-dependent protein kinase holoenzyme complex;nucleus;cytoplasm
• Molecular function: protein kinase activity;cyclin-dependent protein serine/threonine kinase regulator activity;protein kinase binding