CD300E

CD300e molecule, the group of V-set domain containing|CD molecules

Basic information

Region (hg38): 17:74609884-74623738

Previous symbols: [ "CD300LE" ]

Links

ENSG00000186407 ∙ NCBI:342510 ∙ OMIM:609801 ∙ HGNC:28874 ∙ Uniprot:Q496F6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CD300E gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CD300E gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			10	1		11
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	10	1	0

Variants in CD300E

This is a list of pathogenic ClinVar variants found in the CD300E region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-74612742-C-T		not specified	Uncertain significance (Oct 30, 2023)
17-74612768-C-T		not specified	Uncertain significance (Nov 12, 2021)
17-74613944-C-T		not specified	Uncertain significance (Nov 09, 2022)
17-74613972-G-T		not specified	Uncertain significance (Apr 27, 2023)
17-74617127-C-T		not specified	Uncertain significance (Aug 10, 2021)
17-74617339-G-A		not specified	Uncertain significance (Jun 29, 2022)
17-74617354-C-A		not specified	Uncertain significance (Apr 25, 2022)
17-74617358-A-G		not specified	Uncertain significance (Jul 05, 2023)
17-74617391-C-T		not specified	Uncertain significance (Dec 09, 2023)
17-74617423-G-A		not specified	Likely benign (Mar 06, 2023)
17-74617458-C-G		not specified	Uncertain significance (Jun 13, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
CD300E	protein_coding	protein_coding	ENST00000328630	4	13872

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0237	0.920	125741	0	7	125748	0.0000278

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.529	100	116	0.862	0.00000655	1292
Missense in Polyphen		20	25.832	0.77425		325
Synonymous	0.00147	50	50.0	1.00	0.00000311	430
Loss of Function	1.63	4	9.40	0.425	4.90e-7	100

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000289	0.0000289
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.0000353	0.0000352
Middle Eastern	0.0000544	0.0000544
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Probably acts as an activating receptor. {ECO:0000269|PubMed:15557162}.
• Pathway: DAP12 interactions;Innate Immune System;Immune System;Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell;Adaptive Immune System (Consensus)

Recessive Scores

• pRec: 0.0873

Intolerance Scores

• loftool: 0.402
• rvis_EVS: 0.66
• rvis_percentile_EVS: 84.44

Haploinsufficiency Scores

• pHI: 0.0639
• hipred: N
• hipred_score: 0.132
• ghis: 0.395

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0204

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Cd300e
• Phenotype: endocrine/exocrine gland phenotype; homeostasis/metabolism phenotype; reproductive system phenotype; cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan)

Gene ontology

• Biological process: innate immune response;regulation of immune response
• Cellular component: plasma membrane;integral component of membrane