CD72

CD72 molecule, the group of CD molecules|C-type lectin domain containing

Basic information

Region (hg38): 9:35609982-35646810

Links

ENSG00000137101 ∙ NCBI:971 ∙ OMIM:107272 ∙ HGNC:1696 ∙ Uniprot:P21854 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CD72 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CD72 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			16	1		17
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	16	1	0

Variants in CD72

This is a list of pathogenic ClinVar variants found in the CD72 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
9-35610629-C-G		not specified	Uncertain significance (Mar 19, 2024)
9-35610695-G-C		not specified	Uncertain significance (Aug 10, 2023)
9-35610712-G-A		not specified	Uncertain significance (Jan 17, 2024)
9-35610734-T-C		not specified	Uncertain significance (Jan 19, 2024)
9-35611814-G-T		not specified	Uncertain significance (Aug 04, 2021)
9-35612921-C-A		not specified	Uncertain significance (Oct 30, 2023)
9-35615952-C-T		not specified	Likely benign (Jul 09, 2021)
9-35616039-T-A		not specified	Uncertain significance (Aug 02, 2021)
9-35616047-G-A		not specified	Uncertain significance (Nov 03, 2022)
9-35616059-T-C		not specified	Uncertain significance (Jan 06, 2023)
9-35616075-G-C		not specified	Uncertain significance (Dec 13, 2022)
9-35616087-C-T		not specified	Uncertain significance (Aug 14, 2023)
9-35616099-G-A		not specified	Uncertain significance (Mar 24, 2023)
9-35616194-T-C		not specified	Uncertain significance (Apr 11, 2023)
9-35616227-G-T		not specified	Uncertain significance (Jan 02, 2024)
9-35616644-G-A		not specified	Uncertain significance (Jun 02, 2023)
9-35617187-C-A		not specified	Uncertain significance (Jan 24, 2024)
9-35618299-G-C		not specified	Uncertain significance (Nov 12, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
CD72	protein_coding	protein_coding	ENST00000396757	8	37278

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0203	0.979	125736	0	12	125748	0.0000477

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.390	172	187	0.920	0.00000981	2289
Missense in Polyphen		29	41.422	0.70011		546
Synonymous	0.614	74	81.0	0.913	0.00000466	707
Loss of Function	2.97	7	22.0	0.317	0.00000103	251

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000578	0.0000578
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.000106	0.0000879
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Plays a role in B-cell proliferation and differentiation.
• Pathway: B cell receptor signaling pathway - Homo sapiens (human);Developmental Biology;BCR;BCR signaling pathway;Other semaphorin interactions;Semaphorin interactions;Axon guidance (Consensus)

Recessive Scores

• pRec: 0.0989

Intolerance Scores

• loftool: 0.403
• rvis_EVS: 0.37
• rvis_percentile_EVS: 75.29

Haploinsufficiency Scores

• pHI: 0.538
• hipred: Y
• hipred_score: 0.546
• ghis: 0.416

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0182

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Cd72
• Phenotype: hematopoietic system phenotype; respiratory system phenotype; liver/biliary system phenotype; renal/urinary system phenotype; immune system phenotype; homeostasis/metabolism phenotype

Gene ontology

• Biological process: cell adhesion
• Cellular component: plasma membrane;integral component of plasma membrane
• Molecular function: transmembrane signaling receptor activity;signaling receptor binding;protein binding;carbohydrate binding