CDC37L1

cell division cycle 37 like 1, HSP90 cochaperone

Basic information

Region (hg38): 9:4679559-4708399

Links

ENSG00000106993 ∙ NCBI:55664 ∙ OMIM:610346 ∙ HGNC:17179 ∙ Uniprot:Q7L3B6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CDC37L1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CDC37L1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			27	1		28
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	27	1	0

Variants in CDC37L1

This is a list of pathogenic ClinVar variants found in the CDC37L1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
9-4679804-C-G		not specified	Uncertain significance (Oct 08, 2024)
9-4679811-G-C		not specified	Uncertain significance (Apr 12, 2023)
9-4679838-G-A		not specified	Uncertain significance (Nov 21, 2023)
9-4679858-A-G		not specified	Likely benign (Aug 05, 2024)
9-4679859-G-C		not specified	Uncertain significance (Nov 13, 2024)
9-4679871-G-A		not specified	Uncertain significance (Jan 21, 2025)
9-4679882-C-A		not specified	Uncertain significance (Dec 21, 2022)
9-4679882-C-T		not specified	Uncertain significance (Sep 27, 2021)
9-4685055-G-C		not specified	Uncertain significance (Sep 25, 2023)
9-4685076-G-A		not specified	Uncertain significance (Dec 04, 2024)
9-4685126-A-T		not specified	Uncertain significance (Jan 03, 2024)
9-4685157-A-G		not specified	Uncertain significance (Feb 08, 2025)
9-4688549-G-C		not specified	Uncertain significance (Aug 04, 2024)
9-4688589-A-G		not specified	Uncertain significance (Nov 20, 2023)
9-4697127-A-T		not specified	Uncertain significance (Oct 27, 2021)
9-4697149-C-A		not specified	Uncertain significance (Dec 04, 2024)
9-4697180-T-C		not specified	Uncertain significance (Feb 08, 2025)
9-4697861-A-T		not specified	Uncertain significance (Feb 21, 2024)
9-4701867-G-A		not specified	Uncertain significance (Jan 18, 2025)
9-4701906-G-C		not specified	Uncertain significance (Mar 29, 2024)
9-4701940-A-T		not specified	Uncertain significance (Feb 16, 2023)
9-4701949-G-C		not specified	Uncertain significance (Aug 08, 2023)
9-4701958-C-G		not specified	Uncertain significance (Feb 14, 2023)
9-4701960-A-G		not specified	Uncertain significance (Nov 09, 2022)
9-4701962-G-A		not specified	Uncertain significance (Sep 14, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
CDC37L1	protein_coding	protein_coding	ENST00000381854	7	28840

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.966	0.0339	125738	0	5	125743	0.0000199

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.140	176	171	1.03	0.00000805	2248
Missense in Polyphen		40	61.503	0.65037		832
Synonymous	-0.501	63	58.1	1.08	0.00000271	567
Loss of Function	3.65	2	19.3	0.103	9.71e-7	236

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000166	0.000152
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000176	0.0000176
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Co-chaperone that binds to numerous proteins and promotes their interaction with Hsp70 and Hsp90. {ECO:0000250}.
• Pathway: Platelet degranulation ;Response to elevated platelet cytosolic Ca2+;Platelet activation, signaling and aggregation;Hemostasis (Consensus)

Recessive Scores

• pRec: 0.113

Intolerance Scores

• loftool: 0.284
• rvis_EVS: -0.34
• rvis_percentile_EVS: 30.07

Haploinsufficiency Scores

• pHI: 0.123
• hipred: Y
• hipred_score: 0.827
• ghis: 0.611

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.142

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Cdc37l1

Gene ontology

• Biological process: platelet degranulation;protein folding;protein stabilization
• Cellular component: extracellular region;cytoplasm;cytosol;platelet dense granule lumen
• Molecular function: protein binding;heat shock protein binding;unfolded protein binding;chaperone binding