CELF5

CUGBP Elav-like family member 5, the group of RNA binding motif containing

Basic information

Region (hg38): 19:3224661-3297076

Previous symbols: [ "BRUNOL5" ]

Links

ENSG00000161082 ∙ NCBI:60680 ∙ OMIM:612680 ∙ HGNC:14058 ∙ Uniprot:Q8N6W0 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CELF5 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CELF5 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			13			13
nonsense						0
start loss						0
frameshift			1			1
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	14	0	0

Variants in CELF5

This is a list of pathogenic ClinVar variants found in the CELF5 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-3224774-A-G		not specified	Uncertain significance (Dec 27, 2023)
19-3224786-T-C		not specified	Uncertain significance (Jun 11, 2021)
19-3224830-C-T		not specified	Uncertain significance (Sep 26, 2022)
19-3224837-G-C		not specified	Uncertain significance (Oct 12, 2021)
19-3273878-C-T		not specified	Uncertain significance (Apr 26, 2023)
19-3281254-T-TCCGG		not specified	Uncertain significance (Dec 06, 2016)
19-3282384-G-A		not specified	Uncertain significance (Nov 02, 2023)
19-3282399-G-A		not specified	Uncertain significance (Oct 12, 2022)
19-3282451-A-G		not specified	Uncertain significance (Jun 30, 2022)
19-3284946-G-A		not specified	Uncertain significance (Dec 05, 2022)
19-3284953-A-C		not specified	Uncertain significance (Dec 06, 2016)
19-3285944-A-C		not specified	Uncertain significance (Nov 16, 2021)
19-3285957-C-T		not specified	Uncertain significance (Mar 01, 2024)
19-3293439-C-G		not specified	Uncertain significance (Oct 05, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
CELF5	protein_coding	protein_coding	ENST00000292672	12	72374

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.998	0.00156	125618	0	2	125620	0.00000796

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	3.69	121	301	0.402	0.0000177	3136
Missense in Polyphen		20	93.315	0.21433		885
Synonymous	0.0226	136	136	0.998	0.00000920	982
Loss of Function	4.27	1	23.2	0.0430	0.00000104	259

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000504	0.0000462
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: RNA-binding protein implicated in the regulation of pre- mRNA alternative splicing. Mediates exon inclusion and/or exclusion in pre-mRNA that are subject to tissue-specific and developmentally regulated alternative splicing. Specifically activates exon 5 inclusion of cardiac isoforms of TNNT2 during heart remodeling at the juvenile to adult transition. Binds to muscle-specific splicing enhancer (MSE) intronic sites flanking the alternative exon 5 of TNNT2 pre-mRNA. {ECO:0000269|PubMed:11158314}.

Recessive Scores

• pRec: 0.0849

Intolerance Scores

• loftool: 0.0588
• rvis_EVS: -0.71
• rvis_percentile_EVS: 14.4

Haploinsufficiency Scores

• pHI: 0.158
• hipred: Y
• hipred_score: 0.725
• ghis: 0.623

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Celf5

Gene ontology

• Biological process: regulation of alternative mRNA splicing, via spliceosome;mRNA splice site selection
• Cellular component: cellular_component;nucleus;cytoplasm;ribonucleoprotein complex
• Molecular function: RNA binding;mRNA binding;pre-mRNA binding