CMIP

c-Maf inducing protein, the group of MicroRNA protein coding host genes

Basic information

Region (hg38): 16:81444808-81711762

Links

ENSG00000153815 ∙ NCBI:80790 ∙ OMIM:610112 ∙ HGNC:24319 ∙ Uniprot:Q8IY22 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CMIP gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CMIP gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				20	5	25
missense			30			30
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)			2			2
splice region				3	4	7
non coding				6	3	9
Total	0	0	32	26	8

Variants in CMIP

This is a list of pathogenic ClinVar variants found in the CMIP region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
16-81445260-T-G		not specified	Uncertain significance (Feb 06, 2023)
16-81445273-G-A		not specified	Uncertain significance (Feb 10, 2022)
16-81445281-C-G		not specified	Uncertain significance (Mar 21, 2023)
16-81445321-T-C		not specified	Uncertain significance (Oct 22, 2021)
16-81445331-C-G			Likely benign (Feb 08, 2018)
16-81445371-C-A		not specified	Uncertain significance (Jun 18, 2024)
16-81445450-C-G		not specified	Uncertain significance (Dec 07, 2021)
16-81445515-G-A		CMIP-related disorder	Uncertain significance (Apr 05, 2023)
16-81445537-C-T		not specified	Uncertain significance (Apr 28, 2023)
16-81445540-CG-C		CMIP-related disorder	Uncertain significance (Jun 27, 2023)
16-81607602-C-T		CMIP-related disorder	Likely benign (Jun 28, 2018)
16-81607603-G-A		not specified	Uncertain significance (Aug 13, 2021)
16-81607615-G-A		not specified	Uncertain significance (Jun 09, 2022)
16-81607621-C-T			Benign (Dec 31, 2019)
16-81607678-A-G		not specified	Uncertain significance (May 13, 2024)
16-81620887-C-T			Likely benign (Dec 31, 2019)
16-81652254-G-T		not specified	Uncertain significance (Aug 02, 2021)
16-81652278-C-T			Likely benign (Jan 05, 2018)
16-81652320-A-G		CMIP-related disorder	Uncertain significance (Feb 22, 2024)
16-81657804-A-T		not specified	Uncertain significance (Jan 03, 2024)
16-81660887-A-G		not specified	Uncertain significance (Jun 07, 2023)
16-81660895-T-G		CMIP-related disorder	Likely benign (May 30, 2018)
16-81664259-C-T			Likely benign (Dec 18, 2018)
16-81664283-G-A		CMIP-related disorder	Likely benign (Jul 10, 2019)
16-81664289-G-A			Likely benign (Jul 06, 2018)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
CMIP	protein_coding	protein_coding	ENST00000537098	21	266593

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.00	0.00000882	124521	0	2	124523	0.00000803

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	3.26	265	462	0.573	0.0000278	4986
Missense in Polyphen		49	123.08	0.39812		1369
Synonymous	-2.47	259	213	1.22	0.0000147	1528
Loss of Function	5.68	2	41.5	0.0482	0.00000194	482

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000591	0.0000556
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.0000591	0.0000556
South Asian	0.0000328	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Plays a role in T-cell signaling pathway. Isoform 2 may play a role in T-helper 2 (Th2) signaling pathway and seems to represent the first proximal signaling protein that links T-cell receptor-mediated signal to the activation of c-Maf Th2 specific factor. {ECO:0000269|PubMed:12939343, ECO:0000269|PubMed:15128042}.

Intolerance Scores

• loftool: 0.220
• rvis_EVS: -1.53
• rvis_percentile_EVS: 3.37

Haploinsufficiency Scores

• hipred: Y
• hipred_score: 0.696
• ghis: 0.576

Essentials

• essential_gene_CRISPR: E
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: K
• gene_indispensability_pred: E
• gene_indispensability_score: 0.731

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Cmip
• Phenotype: skeleton phenotype; immune system phenotype; digestive/alimentary phenotype; nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan); neoplasm; cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); normal phenotype; liver/biliary system phenotype; embryo phenotype; endocrine/exocrine gland phenotype

Gene ontology

• Cellular component: nucleoplasm;cytosol
• Molecular function: protein binding