CNRIP1

cannabinoid receptor interacting protein 1

Basic information

Region (hg38): 2:68284171-68320051

Previous symbols: [ "C2orf32" ]

Links

ENSG00000119865 ∙ NCBI:25927 ∙ OMIM:618538 ∙ HGNC:24546 ∙ Uniprot:Q96F85 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

• autosomal dominant nonsyndromic hearing loss 58 (Limited), mode of inheritance: AD

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CNRIP1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CNRIP1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			9			9
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	9	0	0

Variants in CNRIP1

This is a list of pathogenic ClinVar variants found in the CNRIP1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-68293966-G-A		not specified	Uncertain significance (Aug 04, 2023)
2-68293969-T-C		not specified	Uncertain significance (Jan 21, 2025)
2-68293990-C-T		not specified	Uncertain significance (Jan 04, 2024)
2-68294005-C-T		not specified	Uncertain significance (Mar 04, 2024)
2-68294026-A-G		not specified	Uncertain significance (Jan 19, 2022)
2-68317159-G-T		not specified	Uncertain significance (Dec 24, 2024)
2-68317182-C-T		not specified	Uncertain significance (Jun 29, 2023)
2-68317290-C-A		not specified	Uncertain significance (Jan 21, 2025)
2-68319231-A-T		not specified	Uncertain significance (Dec 18, 2023)
2-68319322-C-T		not specified	Uncertain significance (Jun 06, 2023)
2-68319341-G-T		not specified	Uncertain significance (May 08, 2023)
2-68319375-C-A		not specified	Uncertain significance (Mar 20, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
CNRIP1	protein_coding	protein_coding	ENST00000263655	3	35881

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.159	0.781	125742	0	4	125746	0.0000159

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.549	78	92.9	0.840	0.00000498	1052
Missense in Polyphen		27	29.808	0.90579		329
Synonymous	-0.674	41	35.9	1.14	0.00000189	316
Loss of Function	1.54	2	6.11	0.327	2.58e-7	76

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000289	0.0000289
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.0000980	0.0000980
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Isoform 1 suppresses cannabinoid receptor CNR1-mediated tonic inhibition of voltage-gated calcium channels. Isoform 2 does not have this effect. {ECO:0000269|PubMed:17895407}.

Recessive Scores

• pRec: 0.113

Intolerance Scores

• loftool: 0.193
• rvis_EVS: -0.16
• rvis_percentile_EVS: 41.64

Haploinsufficiency Scores

• pHI: 0.529
• hipred: Y
• hipred_score: 0.568
• ghis: 0.624

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.323

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Cnrip1

Gene ontology

• Cellular component: cytoplasm;plasma membrane;myelin sheath
• Molecular function: protein C-terminus binding;type 1 cannabinoid receptor binding