COQ10A

coenzyme Q10A

Basic information

Region (hg38): 12:56266890-56270966

Links

ENSG00000135469 ∙ NCBI:93058 ∙ ∙ HGNC:26515 ∙ Uniprot:Q96MF6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the COQ10A gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the COQ10A gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			18			18
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	18	0	0

Variants in COQ10A

This is a list of pathogenic ClinVar variants found in the COQ10A region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-56267126-G-T		not specified	Uncertain significance (Dec 30, 2024)
12-56267156-C-T		not specified	Uncertain significance (Dec 23, 2024)
12-56267200-G-C		not specified	Uncertain significance (Jan 09, 2025)
12-56267201-G-A		not specified	Uncertain significance (Mar 04, 2025)
12-56267215-C-G		not specified	Uncertain significance (Oct 24, 2024)
12-56267221-C-T		not specified	Uncertain significance (Nov 21, 2024)
12-56267843-G-A		not specified	Uncertain significance (Nov 12, 2021)
12-56267904-A-G		not specified	Uncertain significance (Jan 08, 2024)
12-56267919-A-G		not specified	Uncertain significance (Feb 23, 2025)
12-56267922-C-T		not specified	Uncertain significance (Feb 26, 2025)
12-56269087-G-A		not specified	Uncertain significance (Jan 26, 2025)
12-56269094-A-G		not specified	Uncertain significance (Jan 08, 2025)
12-56269148-C-A		not specified	Uncertain significance (Nov 10, 2022)
12-56269193-C-G		not specified	Uncertain significance (Apr 12, 2024)
12-56269486-C-A		not specified	Uncertain significance (Jul 30, 2023)
12-56269498-G-C		not specified	Uncertain significance (Dec 22, 2024)
12-56269551-T-C		not specified	Uncertain significance (Jul 26, 2021)
12-56269559-T-C		not specified	Uncertain significance (Aug 05, 2024)
12-56270159-G-A		not specified	Uncertain significance (Jul 08, 2022)
12-56270166-G-A		not specified	Uncertain significance (Nov 21, 2023)
12-56270237-G-C		not specified	Uncertain significance (Dec 07, 2023)
12-56270244-G-C		not specified	Uncertain significance (Jul 20, 2021)
12-56270253-C-G		not specified	Uncertain significance (Nov 26, 2024)
12-56270256-A-G		not specified	Uncertain significance (Aug 12, 2021)
12-56270283-G-A		not specified	Uncertain significance (Dec 08, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
COQ10A	protein_coding	protein_coding	ENST00000308197	5	4109

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000361	0.845	124759	1	36	124796	0.000148

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.550	120	138	0.868	0.00000812	1573
Missense in Polyphen		29	32.83	0.88335		389
Synonymous	0.258	45	47.3	0.952	0.00000237	516
Loss of Function	1.27	7	11.7	0.600	7.33e-7	121

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000352	0.000352
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000556	0.0000556
Finnish	0.00	0.00
European (Non-Finnish)	0.0000708	0.0000706
Middle Eastern	0.0000556	0.0000556
South Asian	0.000752	0.000719
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Required for the function of coenzyme Q in the respiratory chain. May serve as a chaperone or may be involved in the transport of Q6 from its site of synthesis to the catalytic sites of the respiratory complexes (Probable). {ECO:0000305}.
• Pathway: Respiratory electron transport;The citric acid (TCA) cycle and respiratory electron transport;Metabolism;Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. (Consensus)

Recessive Scores

• pRec: 0.121

Intolerance Scores

• loftool: 0.637
• rvis_EVS: -0.41
• rvis_percentile_EVS: 26.23

Haploinsufficiency Scores

• pHI: 0.241
• hipred: N
• hipred_score: 0.267
• ghis: 0.561

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.166

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Coq10a

Gene ontology

• Biological process: ubiquinone biosynthetic process;cellular respiration
• Cellular component: mitochondrion;mitochondrial inner membrane
• Molecular function: ubiquinone binding