CRB1

protein-coding

crumbs cell polarity complex component 1, the group of Crumbs complex

Gene summary

This gene encodes a protein which is similar to the Drosophila crumbs protein and localizes to the inner segment of mammalian photoreceptors. In Drosophila crumbs localizes to the stalk of the fly photoreceptor and may be a component of the molecular scaffold that controls proper development of polarity in the eye. Mutations in this gene are associated with a severe form of retinitis pigmentosa, RP12, and with Leber congenital amaurosis. Alternate splicing results in multiple transcript variants, some protein coding and some non-protein coding.[provided by RefSeq, Apr 2012]

Previous symbols:
  • RP12

MANE transcript

NM_201253.3

Inheritance

AR, AD

ClinVar variants

P:663U:755B:649

Top phenotype

Leber congenital amaurosis 8; Retinitis pigmentosa 12, autosomal recessive; Pigmented paravenous chorioretinal atrophy

gnomAD constraint

pLI —, LoF o/e 0.62

Max pathogenic AF

—

Genomic locus

chr1:197,268,204-197,478,455

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~210.3 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

Leber congenital amaurosis 8DEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0013453

Submitter: G2P

retinitis pigmentosa 12DEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0010818

Submitter: G2P

pigmented paravenous retinochoroidal atrophyLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0008246

Submitter: G2P

pigmented paravenous retinochoroidal atrophyLIMITED

Inheritance Pattern: Unknown

Disease ID:MONDO:0008246

Submitter: Natera

Leber congenital amaurosis 8DEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0013453

Submitter: Natera

pigmented paravenous retinochoroidal atrophyNO_KNOWN

Inheritance Pattern: AD

Disease ID:MONDO:0008246

Submitter: ClinGen

The *CRB1* gene was first reported in relation to ocular disease in 1999, in affected members from a family with autosomal recessive inheritance who were diagnosed with retinitis pigmentosa 12 (PMID: 10373321). The spectrum of disease with autosomal recessive inheritance subsequently expanded to include cases diagnosed as Leber congenital amaurosis 8 or Coats-like exudative vasculopathy (PMID: 11389483). Cases with autosomal dominant inheritance also emerged in 2005 with the publication of a family with members diagnosed with pigmented paravenous retinochoroidal atrophy (McKay et al., PMID: 15623792). Family members with pigmented paravenous retinochoroidal atrophy exhibited variable expressivity of clinical features including paravenous chorioretinal atrophy, bone spicule pigmentation, optic disc drusen, loss of visual acuity after age 30 years, and/or decreased rod electroretinogram amplitudes. Per criteria outlined by the ClinGen Lumping & Splitting Working Group, the pigmented paravenous retinochoroidal atrophy cases were distinguishable from autosomal recessive cases by their mode of inheritance, the scarcity of additional affected families following the initial report, and the absence of evidence of affected status among heterozygous carriers from the autosomal recessive pedigrees. Therefore, cases caused by inherited *CRB1* variants have been split into two separate disease entities, with the present curation focusing on autosomal dominant cases. Two suspected disease-causing variants were scored as part of this curation (both missense), which have been reported in two total families (PMID: 15623792, PMID: 40623937). The variants both show high frequencies among control individuals in the gnomAD database, and functional characterization of their potential mechanism of pathogenicity has not been performed. At least one reported family had multiple affected individuals who were heterozygous for the suspected disease-causing variant, but they were not sufficient in number to contribute to the scoring of the gene-disease relationship through segregation evidence (PMID: 15623792). This gene-disease association is supported by evidence that *CRB1* is highly specifically expressed in the human retina and to a lesser extent in the retinal pigment epithelium, the optic nerve, and the brain (PMID: 30239781). CRB1 protein localizes to the subapical cell surfaces of rod, cone, and Müller glial cells in order to maintain adherens junctions, regulate apical-basal polarity, and modulate apical membrane size in collaboration with the cadherin-catenin complex (PMID: 760678,7 PMID: 28424578, PMID: 32817065). Animal models of biallelic *CRB1* loss-of-function show ocular or photoreceptor dysfunction, but their relevance to autosomal dominant human disease is unclear (PMID: 28306104, PMID: 39965731, PMID: 32817065, PMID: 12915475). In summary, *CRB1* has a Disputed association with autosomal dominant pigmented paravenous retinochoroidal atrophy. This assertion has been found in at least 2 publications but has very limited segregation and proband evidence accumulated over the past 20 years since the initial report, as well as questions about the potential for the variants to be disease-causing. This classification was approved by the ClinGen Retina Gene Curation Expert Panel on July 2nd, 2026 (SOP Version 12).

hereditary macular dystrophyDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0020242

Submitter: G2P

retinitis pigmentosa 12STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0010818

Submitter: Labcorp Genetics (formerly Invitae)

Leber congenital amaurosis 8STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0013453

Submitter: Labcorp Genetics (formerly Invitae)

pigmented paravenous retinochoroidal atrophySUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0008246

Submitter: Orphanet

inherited retinal dystrophyDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0019118

Submitter: ClinGen

The *CRB1* gene was first reported in relation to ocular disease in 1999, in affected members from a family with autosomal recessive inheritance who were diagnosed with retinitis pigmentosa 12 (den Hollander et al., PMID: 10373321). The spectrum of disease subsequently expanded to include cases diagnosed as Leber congenital amaurosis 8 or RP with Coats-like exudative vasculopathy (PMID: 11389483), or isolated macular disease (PMID: 29391521). Affected individuals generally exhibit retinal features including night blindness, progressive loss of visual acuity, peripheral visual field constriction, photophobia, pigmentary retinopathy with para-arteriolar preservation, central thinning of the outer nuclear layer, hypermetropia, drusen, vascular sheathing, and/or cystoid macular edema. A family was subsequently identified with pigmented paravenous chorioretinal atrophy showing autosomal dominant inheritance (PMID: 15623792). Per criteria outlined by the ClinGen Lumping & Splitting Working Group, the cases diagnosed with retinitis pigmentosa 12 or Leber congenital amaurosis 8 shared a recessive mode of inheritance and biallelic loss-of-function mechanism, with overlapping phenotypes that were consistent with a single spectrum of disease. The autosomal dominant cases were distinguishable by their mode of inheritance, the scarcity of additional affected families following the initial report, and the absence of evidence of affected status among heterozygous carriers from the autosomal recessive pedigrees. Therefore, cases caused by inherited *CRB1* variants have been split into two separate disease entities, with the present curation focusing on autosomal recessive cases referred to as *CRB1*-related retinopathy. Fifteen suspected disease-causing variants were scored as part of this curation (seven missense, one in-frame deletion, three frameshift, three nonsense, and one predicted to disrupt splicing). These variants have been collectively reported in ten probands in three publications (PMID: 10373321, PMID: 11231775, PMID: 22065545). The variant types indicate that the mechanism of pathogenicity is biallelic loss-of-function. At least one reported family had a large number of affected individuals who were homozygous for the suspected disease-causing variant, contributing to the scoring of the gene-disease relationship through segregation evidence. This gene-disease association is also supported by evidence that *CRB1* is highly specifically expressed in the human retina and to a lesser extent in the retinal pigment epithelium, the optic nerve, and the brain (PMID: 30239781). CRB1 protein localizes to the subapical cell surfaces of rod, cone, and Müller glial cells in order to maintain adherens junctions, regulate apical-basal polarity, and modulate apical membrane size in collaboration with the cadherin-catenin complex (PMID: 760678,7 PMID: 28424578, PMID: 32817065). Mutations in the *Drosophila* ortholog *crumbs* result in embryonic lethality associated with morphological abnormalities, cell death of epithelial tissues, and overactivation of autophagy in the eye leading to neurodegeneration (PMID: 28306104, PMID: 39965731). *Crb1* loss-of-function in zebrafish results in retinal dystrophy with enhanced rod sensitivity to damage by white light and loss of cone sensitivity to bright white light (PMID: 32817065). Homozygous *Crb1* loss-of-function in mice causes congenitally short photoreceptor inner and outer segments, as well as retinal folds associated with retinal spotting and regions of photoreceptor degeneration (PMID: 12915475). In summary, CRB1 has a Definitive association with *CRB1*-related retinopathy. This has been repeatedly demonstrated in both research and diagnostic settings, and has been upheld over time without the emergence of contradictory evidence. This classification was approved by the ClinGen Retina Gene Curation Expert Panel on March 5th, 2026 (SOP Version 12).

Leber congenital amaurosis 8STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0013453

Submitter: Laboratory for Molecular Medicine

This gene-disease relationship has undergone rapid assessment. Classifications are based on preliminary review of gene-disease validity during analysis of genomic sequencing results.

nanophthalmiaSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0005514

Submitter: Orphanet

retinitis pigmentosaSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0019200

Submitter: Orphanet

Leber congenital amaurosisSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0018998

Submitter: Orphanet

Clinical Genomic Database (CGD)

Leber congenital amaurosis 8; Retinitis pigmentosa 12, autosomal recessive; Pigmented paravenous chorioretinal atrophyAD/AR

Manifestation: Ophthalmologic

Intervention: General

Rationale: Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing

Refs: 434087; 6614113; 3778279; 2801856; 10508521; 11389483; 15024725; 15623792; 16543197; 16564825; 19140180; 20006823; 21484995; 22065545; 22277662; 23077403; 23379534Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to CRB1 variants in ClinVar

33 Conditions Cataloged
Leber congenital amaurosis 8Total: 1728
Retinitis pigmentosa 12Total: 1655
not providedTotal: 441
Leber congenital amaurosisTotal: 359
CRB1-related disorderTotal: 281
Pigmented paravenous retinochoroidal atrophyTotal: 234
not specifiedTotal: 195
Inborn genetic diseasesTotal: 152

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_201253.3. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
23
clinvar
603
clinvar
627
missense
29
clinvar
227
clinvar
726
clinvar
44
clinvar
1
clinvar
1027
nonsense
74
clinvar
67
clinvar
141
start loss
2
clinvar
2
frameshift
111
clinvar
97
clinvar
5
clinvar
1
clinvar
214
splice donor/acceptor (+/-2bp)
22
clinvar
33
clinvar
1
clinvar
56
Total23642775564812067

Highest pathogenic variant AF is 0.0012272622

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 26 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_201253.3RefSeqNP_957705.112MANE Select
ENST00000367400.8EnsemblENSP00000356370.312MANE Select
NM_001193640.2RefSeqNP_001180569.110Standard
NM_001257965.2RefSeqNP_001244894.112Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Hippo signaling pathway - Homo sapiens (human)

Biological Process

  • plasma membrane organization
  • heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
  • establishment or maintenance of cell polarity
  • cell-cell signaling
  • eye photoreceptor cell development

Molecular Function

  • calcium ion binding
  • protein binding

Cellular Component

  • photoreceptor inner segment
  • extracellular region
  • plasma membrane
  • microvillus
  • cell-cell adherens junction

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000367400
Coding exons
12
Length
276994
Individuals with no LoFs
125643
Homozygous LoFs
0
Heterozygous LoFs
105
Defined
125748
p
0.000418
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense-1.288227251.130.00003639340
Missense (PolyPhen)258249.031.0363278
Synonymous-0.7912942771.060.00001542632
Loss of Function2.573353.20.6200.00000254718

Population LoF Frequency

PopulationCAFp-valueStatus
African0.000370.00037rare
Latino/Admixed American0.000350.00035rare
Ashkenazi Jewish0.0000990.000099rare
East Asian0.000870.00087rare
Finnish0.0000920.000092rare
European (Non-Finnish)0.000500.00050rare
South Asian0.000230.00023rare
Other0.000650.00065rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Plays a role in photoreceptor morphogenesis in the retina. May maintain cell polarization and adhesion.;
Disease
DISEASE: Note=CRB1 mutations have been found in various retinal dystrophies, chronic and disabling disorders of visual function. They predominantly involve the posterior portion of the ocular fundus, due to degeneration in the sensory layer of the retina, retinal pigment epithelium, Bruch membrane, choroid, or a combination of these tissues. Onset of inherited retinal dystrophies is painless, bilateral and typically progressive. Most people experience gradual peripheral vision loss or tunnel vision, and difficulties with poor illumination and night vision. Central vision is usually unaffected, so the person may still be able to read. However, it can also deteriorate to cause total blindness. Examples of retinal dystrophies are retinitis pigmentosa, Leber congenital amaurosis, cone-rod dystrophy among others. {ECO:0000269|PubMed:20683928, ECO:0000269|PubMed:22065545, ECO:0000269|PubMed:28819299}.; DISEASE: Retinitis pigmentosa 12 (RP12) [MIM:600105]: A retinal dystrophy belonging to the group of pigmentary retinopathies. Retinitis pigmentosa is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. RP12 is an autosomal recessive, severe form often manifesting in early childhood. Patients experiment progressive visual field loss with severe visual impairment before the age of twenty. Some patients have a preserved paraarteriolar retinal pigment epithelium (PPRPE) and hypermetropia. {ECO:0000269|PubMed:10508521, ECO:0000269|PubMed:11389483, ECO:0000269|PubMed:11559858, ECO:0000269|PubMed:12573663, ECO:0000269|PubMed:12843338, ECO:0000269|PubMed:15459956, ECO:0000269|PubMed:19140180, ECO:0000269|PubMed:19956407, ECO:0000269|PubMed:20591486, ECO:0000269|PubMed:20956273, ECO:0000269|PubMed:21987686, ECO:0000269|PubMed:22065545, ECO:0000269|PubMed:22128245, ECO:0000269|PubMed:22334370, ECO:0000269|PubMed:28819299}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Leber congenital amaurosis 8 (LCA8) [MIM:613835]: A severe dystrophy of the retina, typically becoming evident in the first years of life. Visual function is usually poor and often accompanied by nystagmus, sluggish or near-absent pupillary responses, photophobia, high hyperopia and keratoconus. {ECO:0000269|PubMed:11231775, ECO:0000269|PubMed:11389483, ECO:0000269|PubMed:12567265, ECO:0000269|PubMed:12573663, ECO:0000269|PubMed:12700176, ECO:0000269|PubMed:12843338, ECO:0000269|PubMed:15024725, ECO:0000269|PubMed:15459956, ECO:0000269|PubMed:15691574, ECO:0000269|PubMed:16205573, ECO:0000269|PubMed:16936081, ECO:0000269|PubMed:17128490, ECO:0000269|PubMed:17438615, ECO:0000269|PubMed:17724218, ECO:0000269|PubMed:18055821, ECO:0000269|PubMed:18682808, ECO:0000269|PubMed:20108431, ECO:0000269|PubMed:20956273, ECO:0000269|PubMed:21602930, ECO:0000269|PubMed:28819299}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Pigmented paravenous chorioretinal atrophy (PPCRA) [MIM:172870]: Unusual retinal degeneration characterized by accumulation of pigmentation along retinal veins. PPCRA is dominantly inherited, but exhibited variable expressivity. Males are more likely to exhibit a severe phenotype, whereas females may remain virtually asymptomatic even in later years. The PPCRA phenotype is associated with a mutation in CRB1 gene which is likely to affect the structure of the CRB1 protein. {ECO:0000269|PubMed:15623792}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.195

Intolerance Scores

LoFtool
0.0401
RVIS EVS
-2.56
RVIS percentile EVS
0.84

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.633

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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