CRH
protein-codingcorticotropin releasing hormone, the group of Neuropeptides
Gene summary
This gene encodes a member of the corticotropin-releasing factor family. The encoded preproprotein is proteolytically processed to generate the mature neuropeptide hormone. In response to stress, this hormone is secreted by the paraventricular nucleus (PVN) of the hypothalamus, binds to corticotropin releasing hormone receptors and stimulates the release of adrenocorticotropic hormone from the pituitary gland. Marked reduction in this protein has been observed in association with Alzheimer's disease. Autosomal recessive hypothalamic corticotropin deficiency has multiple and potentially fatal metabolic consequences including hypoglycemia and hepatitis. In addition to production in the hypothalamus, this protein is also synthesized in peripheral tissues, such as T lymphocytes, and is highly expressed in the placenta. In the placenta it is a marker that determines the length of gestation and the timing of parturition and delivery. A rapid increase in circulating levels of the hormone occurs at the onset of parturition, suggesting that, in addition to its metabolic functions, this protein may act as a trigger for parturition. [provided by RefSeq, Nov 2015]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~2.1 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AD
Disease ID:MONDO:0020300
Submitter: Orphanet
Inheritance Pattern: AD
Disease ID:MONDO:0002612
Submitter: Ambry Genetics
Inheritance Pattern: AD
Disease ID:MONDO:0005027
Submitter: ClinGen
The CRH gene encodes the corticotropin releasing hormone, a hormone and neuropeptide that plays a role in stress response through the hypothalamus-pituitary-adrenal axis. CRH was first reported in relation to autosomal dominant epilepsy in 2005 (Combi et al, PMID: 16222669). Although the phenotype of the asserted gene-disease association was autosomal dominant nocturnal frontal lobe epilepsy, the curation was performed for the higher-level term, epilepsy, because the available evidence does not support an association between the CRH gene and epilepsy of any kind. All the published evidence comes from a series of studies by a single research group. CRH was initially selected as a candidate gene from within a linkage region on chromosome 8q (Combi et al 2005, PMID: 16182932). During this curation, the expert panel raised concerns about the methodology of that study, including the treatment of unaffected individuals as affected for the linkage analysis, the use of an autosomal dominant model in a pedigree with only one affected generation, and a LOD score that was statistically non-significant. All follow-up studies listed in this curation sequenced only one gene, CRH, and did not use genome-wide testing methods. Across several reports, two non-coding single nucleotide variants in the gene’s promoter region and one missense variant were identified in six families. In all six of these families, variant segregation failed to support an association of these variants with the phenotype (see curation for details). Each of the variants identified is present in population databases. Therefore, none of the published genetic-level evidence was given a score in this curation. Although experimental evidence was provided in two of the studies (Combi et al 2005, PMID: 16222669; Sansoni et al 2013, PMID: 23593457), the assays reported have no known connection to epilepsy as a phenotype, and therefore were not scored in this curation. The consensus opinion of the gene curation expert panel was that the identified variants appear to be population variants and based on current knowledge all published assertions of this gene-disease association can be refuted. In summary, the evidence supporting the relationship between CRH and autosomal dominant epilepsy has been refuted and no valid evidence remains to support the claim. New evidence would be needed to support this claim. This classification was approved by the ClinGen Epilepsy Expert Panel on the meeting date 9/21/21 (SOP Version 8).
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to CRH variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_000756.4. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 7 | 1 | 8 | |||
| missense | 34 | 1 | 35 | |||
| nonsense | 0 | |||||
| start loss | 0 | |||||
| frameshift | 0 | |||||
| splice donor/acceptor (+/-2bp) | 1 | 1 | ||||
| Total | 0 | 0 | 35 | 8 | 1 | 44 |
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_000747.1 | 1 | MANE Select | |
| Ensembl | ENSP00000276571.3 | 1 | MANE Select | |
| Ensembl | ENSP00000618684.1 | 1 | Standard | |
| Ensembl | ENSP00000618684.1 | 1 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| crhb | Danio rerio | Structure: melanocyte Quality: aggregated abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Cushing,s syndrome - Homo sapiens (human)
- Long-term depression - Homo sapiens (human)
- Alcoholism - Homo sapiens (human)
- Glucocorticoid Pathway (HPA Axis), Pharmacodynamics
- Corticotropin-releasing hormone signaling pathway
Biological Process
- positive regulation of protein phosphorylation
- synaptic transmission, dopaminergic
- negative regulation of systemic arterial blood pressure
- glucocorticoid biosynthetic process
- inflammatory response
Molecular Function
- signaling receptor binding
- hormone activity
- neuropeptide hormone activity
- protein binding
- corticotropin-releasing hormone activity
Cellular Component
- extracellular region
- extracellular space
- cytoplasm
- varicosity
- perikaryon
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000276571
- Coding exons
- 1
- Length
- 2341
- Individuals with no LoFs
- 0
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 0
- Defined
- 0
- p
- 0.00
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 1.10 | 73 | 105 | 0.697 | 0.00000476 | 1205 |
| Missense (PolyPhen) | 11 | 29.891 | 0.36801 | 369 | ||
| Synonymous | 0.0138 | 49 | 49.1 | 0.998 | 0.00000233 | 428 |
| Loss of Function | 1.89 | 0 | 4.15 | 0.00 | 1.78e-7 | 45 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0 | 0.0 | absent |
| Latino/Admixed American | 0 | 0.0 | absent |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0 | 0.0 | absent |
| Finnish | 0 | 0.0 | absent |
| European (Non-Finnish) | 0 | 0.0 | absent |
| South Asian | 0 | 0.0 | absent |
| Other | 0 | 0.0 | absent |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Hormone regulating the release of corticotropin from pituitary gland (By similarity). Induces NLRP6 in intestinal epithelial cells, hence may influence gut microbiota profile (By similarity). {ECO:0000250|UniProtKB:P06296, ECO:0000250|UniProtKB:Q8CIT0}.;
Recessive Scores
- pRec
- 0.487
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- S
- Essential (gene trap)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.902
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |