CRH

protein-coding

corticotropin releasing hormone, the group of Neuropeptides

Gene summary

This gene encodes a member of the corticotropin-releasing factor family. The encoded preproprotein is proteolytically processed to generate the mature neuropeptide hormone. In response to stress, this hormone is secreted by the paraventricular nucleus (PVN) of the hypothalamus, binds to corticotropin releasing hormone receptors and stimulates the release of adrenocorticotropic hormone from the pituitary gland. Marked reduction in this protein has been observed in association with Alzheimer's disease. Autosomal recessive hypothalamic corticotropin deficiency has multiple and potentially fatal metabolic consequences including hypoglycemia and hepatitis. In addition to production in the hypothalamus, this protein is also synthesized in peripheral tissues, such as T lymphocytes, and is highly expressed in the placenta. In the placenta it is a marker that determines the length of gestation and the timing of parturition and delivery. A rapid increase in circulating levels of the hormone occurs at the onset of parturition, suggesting that, in addition to its metabolic functions, this protein may act as a trigger for parturition. [provided by RefSeq, Nov 2015]

MANE transcript

NM_000756.4

Inheritance

AD

ClinVar variants

U:35B:9

Top phenotype

autosomal dominant nocturnal frontal lobe epilepsy

gnomAD constraint

pLI —, LoF o/e 0

Max pathogenic AF

—

Genomic locus

chr8:66,176,376-66,178,464

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~2.1 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

autosomal dominant nocturnal frontal lobe epilepsySUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0020300

Submitter: Orphanet

frontal lobe epilepsyLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0002612

Submitter: Ambry Genetics

epilepsyNO_KNOWN

Inheritance Pattern: AD

Disease ID:MONDO:0005027

Submitter: ClinGen

The CRH gene encodes the corticotropin releasing hormone, a hormone and neuropeptide that plays a role in stress response through the hypothalamus-pituitary-adrenal axis. CRH was first reported in relation to autosomal dominant epilepsy in 2005 (Combi et al, PMID: 16222669). Although the phenotype of the asserted gene-disease association was autosomal dominant nocturnal frontal lobe epilepsy, the curation was performed for the higher-level term, epilepsy, because the available evidence does not support an association between the CRH gene and epilepsy of any kind. All the published evidence comes from a series of studies by a single research group. CRH was initially selected as a candidate gene from within a linkage region on chromosome 8q (Combi et al 2005, PMID: 16182932). During this curation, the expert panel raised concerns about the methodology of that study, including the treatment of unaffected individuals as affected for the linkage analysis, the use of an autosomal dominant model in a pedigree with only one affected generation, and a LOD score that was statistically non-significant. All follow-up studies listed in this curation sequenced only one gene, CRH, and did not use genome-wide testing methods. Across several reports, two non-coding single nucleotide variants in the gene’s promoter region and one missense variant were identified in six families. In all six of these families, variant segregation failed to support an association of these variants with the phenotype (see curation for details). Each of the variants identified is present in population databases. Therefore, none of the published genetic-level evidence was given a score in this curation. Although experimental evidence was provided in two of the studies (Combi et al 2005, PMID: 16222669; Sansoni et al 2013, PMID: 23593457), the assays reported have no known connection to epilepsy as a phenotype, and therefore were not scored in this curation. The consensus opinion of the gene curation expert panel was that the identified variants appear to be population variants and based on current knowledge all published assertions of this gene-disease association can be refuted. In summary, the evidence supporting the relationship between CRH and autosomal dominant epilepsy has been refuted and no valid evidence remains to support the claim. New evidence would be needed to support this claim. This classification was approved by the ClinGen Epilepsy Expert Panel on the meeting date 9/21/21 (SOP Version 8).

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to CRH variants in ClinVar

4 Conditions Cataloged
not specifiedTotal: 43
not providedTotal: 6
CRH-related disorderTotal: 1
Familial sleep-related hypermotor epilepsyTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_000756.4. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
7
clinvar
1
clinvar
8
missense
34
clinvar
1
clinvar
35
nonsense
0
start loss
0
frameshift
0
splice donor/acceptor (+/-2bp)
1
clinvar
1
Total00358144
Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 6 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_000756.4RefSeqNP_000747.11MANE Select
ENST00000276571.5EnsemblENSP00000276571.31MANE Select
ENST00000948625.1EnsemblENSP00000618684.11Standard
ENST00000948625.2EnsemblENSP00000618684.11Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
crhbDanio rerio

Structure: melanocyte

Quality: aggregated

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Cushing,s syndrome - Homo sapiens (human)
  • Long-term depression - Homo sapiens (human)
  • Alcoholism - Homo sapiens (human)
  • Glucocorticoid Pathway (HPA Axis), Pharmacodynamics
  • Corticotropin-releasing hormone signaling pathway

Biological Process

  • positive regulation of protein phosphorylation
  • synaptic transmission, dopaminergic
  • negative regulation of systemic arterial blood pressure
  • glucocorticoid biosynthetic process
  • inflammatory response

Molecular Function

  • signaling receptor binding
  • hormone activity
  • neuropeptide hormone activity
  • protein binding
  • corticotropin-releasing hormone activity

Cellular Component

  • extracellular region
  • extracellular space
  • cytoplasm
  • varicosity
  • perikaryon

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000276571
Coding exons
1
Length
2341
Individuals with no LoFs
0
Homozygous LoFs
0
Heterozygous LoFs
0
Defined
0
p
0.00
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense1.10731050.6970.000004761205
Missense (PolyPhen)1129.8910.36801369
Synonymous0.01384949.10.9980.00000233428
Loss of Function1.8904.150.001.78e-745

Population LoF Frequency

PopulationCAFp-valueStatus
African00.0absent
Latino/Admixed American00.0absent
Ashkenazi Jewish00.0absent
East Asian00.0absent
Finnish00.0absent
European (Non-Finnish)00.0absent
South Asian00.0absent
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Hormone regulating the release of corticotropin from pituitary gland (By similarity). Induces NLRP6 in intestinal epithelial cells, hence may influence gut microbiota profile (By similarity). {ECO:0000250|UniProtKB:P06296, ECO:0000250|UniProtKB:Q8CIT0}.;

Recessive Scores

pRec
0.487

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
S
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.902

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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