CRTC3-AS1

CRTC3 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 15:90617426-90717253

Links

ENSG00000259736 ∙ NCBI:101926895 ∙ ∙ HGNC:51433 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CRTC3-AS1 gene.

• Inborn genetic diseases (15 variants)
• not provided (2 variants)
• Malignant tumor of prostate (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CRTC3-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			15	1	2	18
Total	0	0	15	1	2

Variants in CRTC3-AS1

This is a list of pathogenic ClinVar variants found in the CRTC3-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-90617932-G-A			Benign (Feb 07, 2018)
15-90625805-G-A		not specified	Uncertain significance (Oct 03, 2023)
15-90625991-C-T		not specified	Uncertain significance (Jan 26, 2023)
15-90629273-C-T		not specified	Uncertain significance (Jul 12, 2022)
15-90629324-C-T		not specified	Uncertain significance (Apr 27, 2022)
15-90629434-G-A		not specified	Uncertain significance (Nov 03, 2023)
15-90629447-C-T		not specified	Uncertain significance (Aug 17, 2022)
15-90629500-A-G		not specified	Uncertain significance (Apr 22, 2024)
15-90629519-A-G		not specified	Uncertain significance (Oct 27, 2022)
15-90638446-A-G		not specified	Uncertain significance (Mar 01, 2023)
15-90638489-A-C		not specified	Uncertain significance (Oct 29, 2021)
15-90638566-C-A		Malignant tumor of prostate	Uncertain significance (-)
15-90638603-C-G		not specified	Uncertain significance (Mar 02, 2023)
15-90638606-C-T		not specified	Uncertain significance (Feb 27, 2024)
15-90638618-A-T		not specified	Uncertain significance (Feb 23, 2023)
15-90638639-C-T		not specified	Uncertain significance (Jun 02, 2023)
15-90638752-C-G		not specified	Uncertain significance (Nov 07, 2023)
15-90638768-G-C		not specified	Uncertain significance (May 25, 2022)
15-90641103-C-G		not specified	Uncertain significance (Apr 29, 2024)
15-90641116-G-A		not specified	Uncertain significance (Sep 06, 2022)
15-90641132-G-T		not specified	Uncertain significance (Jul 12, 2023)
15-90641158-C-T		not specified	Likely benign (Jan 10, 2022)
15-90641172-G-A		not specified	Uncertain significance (Apr 28, 2023)
15-90641178-C-G		not specified	Uncertain significance (Feb 21, 2024)
15-90641958-G-T		not specified	Uncertain significance (May 01, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP