CRYAB

protein-coding

crystallin alpha B, the group of Small heat shock proteins

Gene summary

Mammalian lens crystallins are divided into alpha, beta, and gamma families. Alpha crystallins are composed of two gene products: alpha-A and alpha-B, for acidic and basic, respectively. Alpha crystallins can be induced by heat shock and are members of the small heat shock protein (HSP20) family. They act as molecular chaperones although they do not renature proteins and release them in the fashion of a true chaperone; instead they hold them in large soluble aggregates. These heterogeneous aggregates consist of 30-40 subunits; the alpha-A and alpha-B subunits have a 3:1 ratio, respectively. Two additional functions of alpha crystallins are an autokinase activity and participation in the intracellular architecture. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. Alpha-A and alpha-B gene products are differentially expressed; alpha-A is preferentially restricted to the lens and alpha-B is expressed widely in many tissues and organs. Elevated expression of alpha-B crystallin occurs in many neurological diseases; a missense mutation cosegregated in a family with a desmin-related myopathy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2019]

Previous symbols:
  • CRYA2

MANE transcript

NM_001289808.2

Inheritance

AD, AR

ClinVar variants

P:25U:193B:84

Top phenotype

Myopathy, myofibrillar, 2; Cardiomyopathy, dilated, 1II

gnomAD constraint

pLI —, LoF o/e 0.57

Max pathogenic AF

—

Genomic locus

chr11:111,908,564-111,923,722

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~15.2 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

myofibrillar myopathy 2STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0012130

Submitter: Labcorp Genetics (formerly Invitae)

fatal infantile hypertonic myofibrillar myopathyLIMITED

Inheritance Pattern: AR

Disease ID:MONDO:0013472

Submitter: Ambry Genetics

fatal infantile hypertonic myofibrillar myopathyLIMITED

Inheritance Pattern: AR

Disease ID:MONDO:0013472

Submitter: Ambry Genetics

cataract 16 multiple typesSTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0013411

Submitter: Labcorp Genetics (formerly Invitae)

fatal infantile hypertonic myofibrillar myopathySTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0013472

Submitter: Labcorp Genetics (formerly Invitae)

fatal infantile hypertonic myofibrillar myopathyMODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0013472

Submitter: G2P

early-onset posterior polar cataractSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0020378

Submitter: Orphanet

myofibrillar myopathy 2SUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0012130

Submitter: Orphanet

cataract 16 multiple typesSTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0013411

Submitter: Labcorp Genetics (formerly Invitae)

early-onset lamellar cataractSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0018611

Submitter: Orphanet

familial isolated dilated cardiomyopathySUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0015470

Submitter: Orphanet

cataract 16 multiple typesLIMITED

Inheritance Pattern: AR

Disease ID:MONDO:0013411

Submitter: G2P

dilated cardiomyopathy 1IILIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0014073

Submitter: Labcorp Genetics (formerly Invitae)

early-onset nuclear cataractSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0020376

Submitter: Orphanet

fatal infantile hypertonic myofibrillar myopathySUPPORTIVE

Inheritance Pattern: AR

Disease ID:MONDO:0013472

Submitter: Orphanet

myofibrillar myopathy 2DEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0012130

Submitter: G2P

Clinical Genomic Database (CGD)

Myopathy, myofibrillar, 2; Cardiomyopathy, dilated, 1IIAD

Manifestation: Cardiovascular; Musculoskeletal; Ophthalmologic

Intervention: Cardiovascular

Rationale: Individuals with Myopathy, myofibrillar, 2 typically present with slowly progressive weakness, and a significant proportion of individuals demonstrate cardiomyopathy, such that surveillance for arrhythmia or conduction defects may allow early treatment (eg, pacemaker, ICD); Cardiac transplantation may be necessary in individuals with severe forms of cardiomyopathy; Individuals with Cardiomyopathy, dilated, 1II may present with arrhythmias, including sequelae such as sudden cardiac death, and surveillance (eg, with electrocardiogram and echocardiogram) may allow early management as described for other CRYAB-related cardiac manifestations

Comments: Individuals have been described with a combination of cardiovascular, musculoskeletal, and ophthalmologic manifestations, as well as apparently isolated findings affecting each of these organ systems

Refs: 570292; 8000975; 9731540; 11577372; 14681890; 16483541; 16793013; 20301672; 21337604; 21920752; 23197161; 23590293Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to CRYAB variants in ClinVar

14 Conditions Cataloged
Dilated cardiomyopathy 1IITotal: 261
Cardiovascular phenotypeTotal: 138
not providedTotal: 72
not specifiedTotal: 39
Cataract 16 multiple typesTotal: 34
Myofibrillar myopathy 2Total: 30
Fatal infantile hypertonic myofibrillar myopathyTotal: 25
CardiomyopathyTotal: 9

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_001289808.2. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
2
clinvar
76
clinvar
2
clinvar
80
missense
5
clinvar
4
clinvar
172
clinvar
5
clinvar
1
clinvar
187
nonsense
1
clinvar
1
clinvar
3
clinvar
5
start loss
2
clinvar
2
frameshift
7
clinvar
5
clinvar
10
clinvar
22
splice donor/acceptor (+/-2bp)
6
clinvar
6
Total1312193813302

Highest pathogenic variant AF is 0.000015809757

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 50 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_001289808.2RefSeqNP_001276737.13MANE Select
ENST00000650687.2EnsemblENSP00000499082.13MANE Select
NM_001289807.1RefSeqNP_001276736.13Standard
NM_001330379.1RefSeqNP_001317308.12Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
cryabaDanio rerio

Structure: muscle cell

Quality: increased amount

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Longevity regulating pathway - multiple species - Homo sapiens (human)
  • Protein processing in endoplasmic reticulum - Homo sapiens (human)

Biological Process

  • response to hypoxia
  • lens development in camera-type eye
  • protein folding
  • muscle contraction
  • tubulin complex assembly

Molecular Function

  • amyloid-beta binding
  • structural constituent of eye lens
  • protein binding
  • microtubule binding
  • identical protein binding

Cellular Component

  • nucleus
  • nucleoplasm
  • cytoplasm
  • mitochondrion
  • Golgi apparatus

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000533475
Coding exons
3
Length
15158
Individuals with no LoFs
125736
Homozygous LoFs
0
Heterozygous LoFs
12
Defined
125748
p
0.0000477
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.476881020.8670.000006371135
Missense (PolyPhen)3549.8960.70146521
Synonymous0.7233338.70.8520.00000212358
Loss of Function0.92635.300.5662.30e-767

Population LoF Frequency

PopulationCAFp-valueStatus
African0.0000620.000062rare
Latino/Admixed American0.0000580.000058rare
Ashkenazi Jewish00.0absent
East Asian00.0absent
Finnish00.0absent
European (Non-Finnish)0.0000620.000062rare
South Asian00.0absent
Other0.000330.00033rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: May contribute to the transparency and refractive index of the lens. Has chaperone-like activity, preventing aggregation of various proteins under a wide range of stress conditions.;
Disease
DISEASE: Myopathy, myofibrillar, 2 (MFM2) [MIM:608810]: A form of myofibrillar myopathy, a group of chronic neuromuscular disorders characterized at ultrastructural level by disintegration of the sarcomeric Z disk and myofibrils, and replacement of the normal myofibrillar markings by small dense granules, or larger hyaline masses, or amorphous material. MFM2 is characterized by weakness of the proximal and distal limb muscles, weakness of the neck, velopharynx and trunk muscles, hypertrophic cardiomyopathy, and cataract in a subset of patients. {ECO:0000269|PubMed:12601044, ECO:0000269|PubMed:14681890, ECO:0000269|PubMed:21920752, ECO:0000269|PubMed:9731540}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Cataract 16, multiple types (CTRCT16) [MIM:613763]: An opacification of the crystalline lens of the eye that frequently results in visual impairment or blindness. Opacities vary in morphology, are often confined to a portion of the lens, and may be static or progressive. In general, the more posteriorly located and dense an opacity, the greater the impact on visual function. CTRCT16 includes posterior polar cataract, among others. Posterior polar cataract is a subcapsular opacity, usually disk-shaped, located at the back of the lens. {ECO:0000269|PubMed:11577372}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Note=CRYAB mutations may be involved in restrictive cardiomyopathy (RCM), a rare non-ischemic myocardial disease. RCM is characterized by restrictive ventricular-filling physiology in the presence of normal or reduced diastolic and/or systolic volumes (of 1 or both ventricles), biatrial enlargement, and normal ventricular wall thickness. {ECO:0000269|PubMed:28493373}.; DISEASE: Myopathy, myofibrillar, fatal infantile hypertonic, alpha-B crystallin-related (MFMFIH-CRYAB) [MIM:613869]: A form of myofibrillar myopathy, a group of chronic neuromuscular disorders characterized at ultrastructural level by disintegration of the sarcomeric Z disk and myofibrils, and replacement of the normal myofibrillar markings by small dense granules, or larger hyaline masses, or amorphous material. MFMFIH-CRYAB has onset in the first weeks of life after a normal neonatal period. Affected infants show rapidly progressive muscular rigidity of the trunk and limbs associated with increasing respiratory difficulty resulting in death before age 3 years. {ECO:0000269|PubMed:21337604}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Cardiomyopathy, dilated 1II (CMD1II) [MIM:615184]: A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. {ECO:0000269|PubMed:16483541, ECO:0000269|PubMed:16793013}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.565

Intolerance Scores

LoFtool
0.344
RVIS EVS
-0.25
RVIS percentile EVS
35.42

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.951

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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