CTAGE15

CTAGE family member 15, the group of CTAGE family

Basic information

Region (hg38): 7:143571801-143574387

Previous symbols: [ "CTAGE15P" ]

Links

ENSG00000271079 ∙ NCBI:441294 ∙ ∙ HGNC:37295 ∙ Uniprot:A4D2H0 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CTAGE15 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CTAGE15 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			21	2		23
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	21	2	0

Variants in CTAGE15

This is a list of pathogenic ClinVar variants found in the CTAGE15 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-143572035-G-A		not specified	Uncertain significance (Apr 08, 2024)
7-143572409-T-C		not specified	Uncertain significance (Oct 26, 2021)
7-143572511-G-A		not specified	Uncertain significance (May 25, 2022)
7-143572533-G-A		not specified	Uncertain significance (Jul 16, 2021)
7-143572560-T-A		not specified	Uncertain significance (Jan 25, 2023)
7-143572560-T-C		not specified	Uncertain significance (May 11, 2022)
7-143572568-T-G		not specified	Uncertain significance (Dec 20, 2023)
7-143572572-A-G		not specified	Uncertain significance (Dec 10, 2024)
7-143572579-C-G		not specified	Uncertain significance (Jan 23, 2025)
7-143572644-T-A		not specified	Uncertain significance (Oct 12, 2024)
7-143572644-T-C		not specified	Uncertain significance (Jan 19, 2025)
7-143572677-C-A		not specified	Uncertain significance (Nov 18, 2022)
7-143572715-C-G		not specified	Uncertain significance (Dec 20, 2023)
7-143572830-T-C		not specified	Uncertain significance (Aug 11, 2022)
7-143572974-T-C		not specified	Uncertain significance (Mar 07, 2023)
7-143572997-A-G		not specified	Uncertain significance (Dec 17, 2023)
7-143573039-T-C		not specified	Uncertain significance (Jan 03, 2024)
7-143573073-T-G		not specified	Uncertain significance (Sep 02, 2021)
7-143573078-G-A		not specified	Likely benign (Jan 03, 2025)
7-143573090-C-T		not specified	Uncertain significance (Dec 07, 2021)
7-143573091-G-T		not specified	Uncertain significance (Apr 08, 2022)
7-143573142-A-T		not specified	Uncertain significance (Jan 01, 2025)
7-143573145-A-G		not specified	Uncertain significance (Mar 13, 2023)
7-143573162-C-T		not specified	Uncertain significance (Oct 04, 2024)
7-143573202-G-A		not specified	Uncertain significance (Feb 08, 2025)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
CTAGE15	protein_coding	protein_coding	ENST00000420911	1	2587

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.647	37	49.9	0.742	0.00000241	4969
Missense in Polyphen		3	7.9382	0.37792		880
Synonymous	1.70	8	16.9	0.474	7.28e-7	1475
Loss of Function

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish
East Asian
Finnish
European (Non-Finnish)
Middle Eastern
South Asian
Other

dbNSFP

Source: dbNSFP

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.255

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: endoplasmic reticulum to Golgi vesicle-mediated transport;protein secretion;vesicle cargo loading;lipoprotein transport
• Cellular component: endoplasmic reticulum membrane;integral component of membrane;endoplasmic reticulum exit site
• Molecular function: lipoprotein transporter activity