CWC25

CWC25 spliceosome associated protein homolog, the group of Spliceosomal Bact complex|NTC associated proteins

Basic information

Region (hg38): 17:38800441-38825355

Previous symbols: [ "CCDC49" ]

Links

ENSG00000273559 ∙ NCBI:54883 ∙ ∙ HGNC:25989 ∙ Uniprot:Q9NXE8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CWC25 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CWC25 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			37	1		38
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region				1		1
non coding						0
Total	0	0	37	1	0

Variants in CWC25

This is a list of pathogenic ClinVar variants found in the CWC25 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-38802106-A-C		not specified	Uncertain significance (Jan 31, 2025)
17-38802147-A-G		not specified	Uncertain significance (Nov 13, 2024)
17-38802162-C-T		not specified	Uncertain significance (Mar 28, 2024)
17-38802204-C-G		not specified	Uncertain significance (Apr 26, 2023)
17-38802719-G-A		not specified	Uncertain significance (Mar 01, 2025)
17-38802727-A-G		not specified	Uncertain significance (Apr 18, 2024)
17-38802748-C-T		not specified	Uncertain significance (Aug 02, 2021)
17-38802764-C-A		not specified	Uncertain significance (Dec 14, 2022)
17-38802772-T-C		not specified	Uncertain significance (Aug 14, 2024)
17-38802830-G-A		not specified	Uncertain significance (Feb 23, 2023)
17-38802835-C-T		not specified	Uncertain significance (Apr 28, 2022)
17-38802861-T-C		not specified	Likely benign (May 23, 2023)
17-38806301-T-A		not specified	Uncertain significance (Sep 20, 2023)
17-38806307-C-T		not specified	Uncertain significance (Aug 17, 2022)
17-38806768-T-G		not specified	Uncertain significance (Dec 14, 2021)
17-38806843-C-G		not specified	Uncertain significance (Jul 25, 2024)
17-38806867-G-A		not specified	Uncertain significance (Jul 06, 2021)
17-38806934-T-C		not specified	Uncertain significance (Jul 14, 2021)
17-38806949-G-A		not specified	Uncertain significance (Apr 23, 2024)
17-38806960-C-T		not specified	Likely benign (May 04, 2023)
17-38806972-C-T		not specified	Uncertain significance (Mar 20, 2024)
17-38806976-C-A		not specified	Uncertain significance (Sep 03, 2024)
17-38809710-C-T		not specified	Uncertain significance (Nov 10, 2022)
17-38809746-T-C		not specified	Uncertain significance (Jan 20, 2025)
17-38810490-C-T		not specified	Uncertain significance (Oct 13, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

• Pathway: Metabolism of RNA;mRNA Splicing - Major Pathway;mRNA Splicing;Processing of Capped Intron-Containing Pre-mRNA (Consensus)

Recessive Scores

• pRec: 0.105

Intolerance Scores

• rvis_EVS: -0.12
• rvis_percentile_EVS: 45.13

Haploinsufficiency Scores

• pHI: 0.205
• hipred: N
• hipred_score: 0.393

Essentials

• essential_gene_CRISPR: E
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: E
• gene_indispensability_pred: E
• gene_indispensability_score: 0.860

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Cwc25

Zebrafish Information Network

• Gene name: cwc25
• Affected structure: head
• Phenotype tag: abnormal
• Phenotype quality: pointed

Gene ontology

• Biological process: mRNA splicing, via spliceosome
• Cellular component: nucleoplasm;nuclear speck