DLEU1

deleted in lymphocytic leukemia 1, the group of Long non-coding RNAs with non-systematic symbols

Basic information

Region (hg38): 13:50081725-50906856

Previous symbols: [ "DLB1", "BCMS" ]

Links

ENSG00000176124 ∙ NCBI:10301 ∙ OMIM:605765 ∙ HGNC:13747 ∙ Uniprot:O43261 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the DLEU1 gene.

• Inborn genetic diseases (14 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the DLEU1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			14			14
Total	0	0	14	0	0

Variants in DLEU1

This is a list of pathogenic ClinVar variants found in the DLEU1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
13-50713225-T-A		not specified	Uncertain significance (Oct 24, 2024)
13-50713230-A-G		not specified	Uncertain significance (Oct 27, 2022)
13-50843228-C-T		not specified	Uncertain significance (Aug 10, 2021)
13-50843261-G-A		not specified	Uncertain significance (Feb 28, 2023)
13-50843280-G-C		not specified	Uncertain significance (Jun 12, 2023)
13-50843338-G-T		not specified	Uncertain significance (Sep 20, 2023)
13-50843381-T-G		not specified	Uncertain significance (Oct 07, 2024)
13-50843400-C-G		not specified	Uncertain significance (Mar 25, 2024)
13-50843409-C-T		not specified	Uncertain significance (Oct 29, 2021)
13-50843417-C-G		not specified	Uncertain significance (Nov 09, 2024)
13-50843419-A-C		not specified	Uncertain significance (Jun 11, 2021)
13-50843433-C-T		not specified	Uncertain significance (Mar 11, 2022)
13-50843451-C-G		not specified	Uncertain significance (Sep 22, 2023)
13-50843460-G-T		not specified	Uncertain significance (Mar 04, 2024)
13-50843465-G-T		not specified	Uncertain significance (Feb 26, 2024)
13-50843474-C-T		not specified	Uncertain significance (Aug 28, 2024)
13-50843496-C-T		not specified	Uncertain significance (Apr 12, 2022)
13-50843502-C-T		not specified	Uncertain significance (Feb 13, 2024)
13-50843511-C-T		not specified	Uncertain significance (Nov 22, 2021)
13-50843520-G-T		not specified	Uncertain significance (Dec 02, 2021)
13-50843534-C-T		not specified	Uncertain significance (Oct 12, 2022)
13-50843558-C-A		not specified	Uncertain significance (May 05, 2023)
13-50843622-C-A		not specified	Uncertain significance (Jan 31, 2022)
13-50843642-G-A		not specified	Uncertain significance (Aug 05, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
DLEU1	protein_coding	protein_coding	ENST00000378180	2	641066

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.470	0.449	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.683	28	40.2	0.697	0.00000174	510
Missense in Polyphen		1	2.5747	0.3884		28
Synonymous	1.62	7	15.0	0.468	6.63e-7	132
Loss of Function	1.20	0	1.67	0.00	7.04e-8	22

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May act as a tumor suppressor.
• Pathway: Validated targets of C-MYC transcriptional repression (Consensus)

Haploinsufficiency Scores

• pHI: 0.0296
• ghis: 0.399

Essentials

• gene_indispensability_pred: E
• gene_indispensability_score: 0.731

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Molecular function: protein binding